Is LAMMPS Script Syntax safe to use?

LAMMPS Script Syntax has a security risk score of 64.92/100 (MEDIUM risk). Our security analysis detected 3871 findings. Review the detailed security assessment below to understand the specific risks before installation.

What are the security risks of LAMMPS Script Syntax?

Based on our automated security analysis, LAMMPS Script Syntax presents medium risk level. The extension is analyzed for malware patterns, secret exposure, network communications, permissions, and supply chain vulnerabilities.

How is the security score calculated?

Risky Plugins calculates security scores using weighted categories: severity of findings (25 points max), malware detections (35 points), secret exposure (28 points), network communications (10 points), and obfuscation (10 points). Scores range from 0-100, with higher scores indicating greater risk.

What does CRITICAL, HIGH, MEDIUM, LOW, MINIMAL risk mean?

CRITICAL (80-100): Severe security issues like malware. HIGH (60-79): Significant vulnerabilities. MEDIUM (40-59): Moderate security concerns. LOW (20-39): Minor issues. MINIMAL (0-19): Very low risk. Always review findings before installing any extension.

Is "LAMMPS Script Syntax" on VS Code Marketplace Safe to Install?

Name: LAMMPS Script Syntax
Availability: InStock
Rating: 5 (1 reviews)
Author: thangckt

thangckt · vscode · v1.0.1

Keyword/Syntax highlighting extension for Molecular Dynamics Scripts LAMMPS

Risk Assessment

Analyzed

64.92

out of 100

MEDIUM

3871 security findings detected across all analyzers

VS Code extension analyzed via package manifest and static code analysis

Severity Breakdown

Critical

High

3855

Medium

Low

Info

Finding Categories

Network

761

IoC Indicators

About This Extension

Keyword/Syntax highlighting extension for Molecular Dynamics Scripts LAMMPS

Detailed Findings

1 total

Indicators of Compromise

Network indicators, suspicious strings, and potential IoCs extracted during analysis

URLs

760

IP Addresses

Strings

761

All Indicators · 761

URL

detected URL: https://docs.lammps.org/compute_pressure.html)

XIOC detected URL: https://docs.lammps.org/compute_pressure.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/kspace_style.html),

XIOC detected URL: https://docs.lammps.org/kspace_style.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_neb_spin.html)

XIOC detected URL: https://docs.lammps.org/fix_neb_spin.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_msst.html)

XIOC detected URL: https://docs.lammps.org/fix_msst.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_mol_swap.html)

XIOC detected URL: https://docs.lammps.org/fix_mol_swap.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_meso_move.html)

XIOC detected URL: https://docs.lammps.org/fix_meso_move.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_npt_sphere.html)

XIOC detected URL: https://docs.lammps.org/fix_npt_sphere.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_npt_cauchy.html)

XIOC detected URL: https://docs.lammps.org/fix_npt_cauchy.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_npt_body.html)

XIOC detected URL: https://docs.lammps.org/fix_npt_body.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_npt_asphere.html)

XIOC detected URL: https://docs.lammps.org/fix_npt_asphere.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_nphug.html)

XIOC detected URL: https://docs.lammps.org/fix_nphug.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_nph_sphere.html)

XIOC detected URL: https://docs.lammps.org/fix_nph_sphere.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_nh_eff.html)

XIOC detected URL: https://docs.lammps.org/fix_nh_eff.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_nve_dot.html)

XIOC detected URL: https://docs.lammps.org/fix_nve_dot.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_nve_body.html)

XIOC detected URL: https://docs.lammps.org/fix_nve_body.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_nve_awpmd.html)

XIOC detected URL: https://docs.lammps.org/fix_nve_awpmd.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_nve_asphere_noforce.html)

XIOC detected URL: https://docs.lammps.org/fix_nve_asphere_noforce.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_nve_asphere.html)

XIOC detected URL: https://docs.lammps.org/fix_nve_asphere.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_numdiff_virial.html)

XIOC detected URL: https://docs.lammps.org/fix_numdiff_virial.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_numdiff.html)

XIOC detected URL: https://docs.lammps.org/fix_numdiff.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_nve_bpm_sphere.html)

XIOC detected URL: https://docs.lammps.org/fix_nve_bpm_sphere.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_nve_sphere.html)

XIOC detected URL: https://docs.lammps.org/fix_nve_sphere.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_nve_noforce.html)

XIOC detected URL: https://docs.lammps.org/fix_nve_noforce.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_nve_manifold_rattle.html)

XIOC detected URL: https://docs.lammps.org/fix_nve_manifold_rattle.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_nve_line.html)

XIOC detected URL: https://docs.lammps.org/fix_nve_line.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_nve_eff.html)

XIOC detected URL: https://docs.lammps.org/fix_nve_eff.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_nve_dotc_langevin.html)

XIOC detected URL: https://docs.lammps.org/fix_nve_dotc_langevin.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_nvt_sphere.html)

XIOC detected URL: https://docs.lammps.org/fix_nvt_sphere.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_nvt_manifold_rattle.html)

XIOC detected URL: https://docs.lammps.org/fix_nvt_manifold_rattle.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_nvt_body.html)

XIOC detected URL: https://docs.lammps.org/fix_nvt_body.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_nvt_asphere.html)

XIOC detected URL: https://docs.lammps.org/fix_nvt_asphere.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_nvk.html)

XIOC detected URL: https://docs.lammps.org/fix_nvk.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_nve_tri.html)

XIOC detected URL: https://docs.lammps.org/fix_nve_tri.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_nve_spin.html)

XIOC detected URL: https://docs.lammps.org/fix_nve_spin.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_planeforce.html)

XIOC detected URL: https://docs.lammps.org/fix_planeforce.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_pimd.html)

XIOC detected URL: https://docs.lammps.org/fix_pimd.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_pair.html)

XIOC detected URL: https://docs.lammps.org/fix_pair.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_pafi.html)

XIOC detected URL: https://docs.lammps.org/fix_pafi.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_orient_eco.html)

XIOC detected URL: https://docs.lammps.org/fix_orient_eco.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_orient.html)

XIOC detected URL: https://docs.lammps.org/fix_orient.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_oneway.html)

XIOC detected URL: https://docs.lammps.org/fix_oneway.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_press_langevin.html)

XIOC detected URL: https://docs.lammps.org/fix_press_langevin.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_press_berendsen.html)

XIOC detected URL: https://docs.lammps.org/fix_press_berendsen.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_precession_spin.html)

XIOC detected URL: https://docs.lammps.org/fix_precession_spin.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_pour.html)

XIOC detected URL: https://docs.lammps.org/fix_pour.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_polarize.html)

XIOC detected URL: https://docs.lammps.org/fix_polarize.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_poems.html)

XIOC detected URL: https://docs.lammps.org/fix_poems.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_plumed.html)

XIOC detected URL: https://docs.lammps.org/fix_plumed.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_qmmm.html)

XIOC detected URL: https://docs.lammps.org/fix_qmmm.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_qeq_rel_reaxff.html)

XIOC detected URL: https://docs.lammps.org/fix_qeq_rel_reaxff.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_qeq_comb.html)

XIOC detected URL: https://docs.lammps.org/fix_qeq_comb.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_qbmsst.html)

XIOC detected URL: https://docs.lammps.org/fix_qbmsst.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_python_move.html)

XIOC detected URL: https://docs.lammps.org/fix_python_move.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_python_invoke.html)

XIOC detected URL: https://docs.lammps.org/fix_python_invoke.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_propel_self.html)

XIOC detected URL: https://docs.lammps.org/fix_propel_self.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_rheo_oxidation.html)

XIOC detected URL: https://docs.lammps.org/fix_rheo_oxidation.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_rheo_thermal.html)

XIOC detected URL: https://docs.lammps.org/fix_rheo_thermal.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_rheo.html)

XIOC detected URL: https://docs.lammps.org/fix_rheo.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_recenter.html)

XIOC detected URL: https://docs.lammps.org/fix_recenter.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_reaxff_bonds.html)

XIOC detected URL: https://docs.lammps.org/fix_reaxff_bonds.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_qtpie_reaxff.html)

XIOC detected URL: https://docs.lammps.org/fix_qtpie_reaxff.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_qtb.html)

XIOC detected URL: https://docs.lammps.org/fix_qtb.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_shardlow.html)

XIOC detected URL: https://docs.lammps.org/fix_shardlow.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_sgcmc.html)

XIOC detected URL: https://docs.lammps.org/fix_sgcmc.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/compute_saed.html)

XIOC detected URL: https://docs.lammps.org/compute_saed.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_saed_vtk.html)

XIOC detected URL: https://docs.lammps.org/fix_saed_vtk.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_rigid_meso.html)

XIOC detected URL: https://docs.lammps.org/fix_rigid_meso.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_rhok.html)

XIOC detected URL: https://docs.lammps.org/fix_rhok.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_rheo_pressure.html)

XIOC detected URL: https://docs.lammps.org/fix_rheo_pressure.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_sph_stationary.html)

XIOC detected URL: https://docs.lammps.org/fix_sph_stationary.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_smd_setvel.html)

XIOC detected URL: https://docs.lammps.org/fix_smd_setvel.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_smd_move_triangulated_surface.html)

XIOC detected URL: https://docs.lammps.org/fix_smd_move_triangulated_surface.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_smd_integrate_ulsph.html)

XIOC detected URL: https://docs.lammps.org/fix_smd_integrate_ulsph.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_smd_integrate_tlsph.html)

XIOC detected URL: https://docs.lammps.org/fix_smd_integrate_tlsph.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_smd_adjust_dt.html)

XIOC detected URL: https://docs.lammps.org/fix_smd_adjust_dt.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_smd.html)

XIOC detected URL: https://docs.lammps.org/fix_smd.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_store_state.html)

XIOC detected URL: https://docs.lammps.org/fix_store_state.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_store_force.html)

XIOC detected URL: https://docs.lammps.org/fix_store_force.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_srd.html)

XIOC detected URL: https://docs.lammps.org/fix_srd.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_spring_self.html)

XIOC detected URL: https://docs.lammps.org/fix_spring_self.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_spring_rg.html)

XIOC detected URL: https://docs.lammps.org/fix_spring_rg.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_spring_chunk.html)

XIOC detected URL: https://docs.lammps.org/fix_spring_chunk.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_spring.html)

XIOC detected URL: https://docs.lammps.org/fix_spring.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_tmd.html)

XIOC detected URL: https://docs.lammps.org/fix_tmd.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_ti_spring.html)

XIOC detected URL: https://docs.lammps.org/fix_ti_spring.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_thermal_conductivity.html)

XIOC detected URL: https://docs.lammps.org/fix_thermal_conductivity.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_tgnh_drude.html)

XIOC detected URL: https://docs.lammps.org/fix_tgnh_drude.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_tfmc.html)

XIOC detected URL: https://docs.lammps.org/fix_tfmc.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_temp_rescale_eff.html)

XIOC detected URL: https://docs.lammps.org/fix_temp_rescale_eff.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_temp_csvr.html)

XIOC detected URL: https://docs.lammps.org/fix_temp_csvr.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/Howto_body.html)

XIOC detected URL: https://docs.lammps.org/Howto_body.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_wall_body_polygon.html)

XIOC detected URL: https://docs.lammps.org/fix_wall_body_polygon.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_viscous_sphere.html)

XIOC detected URL: https://docs.lammps.org/fix_viscous_sphere.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_viscosity.html)

XIOC detected URL: https://docs.lammps.org/fix_viscosity.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_vector.html)

XIOC detected URL: https://docs.lammps.org/fix_vector.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_tune_kspace.html)

XIOC detected URL: https://docs.lammps.org/fix_tune_kspace.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_ttm.html)

XIOC detected URL: https://docs.lammps.org/fix_ttm.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_wall_reflect_stochastic.html)

XIOC detected URL: https://docs.lammps.org/fix_wall_reflect_stochastic.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_wall_piston.html)

XIOC detected URL: https://docs.lammps.org/fix_wall_piston.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_wall_gran_region.html)

XIOC detected URL: https://docs.lammps.org/fix_wall_gran_region.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_wall_flow.html)

XIOC detected URL: https://docs.lammps.org/fix_wall_flow.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_wall_ees.html)

XIOC detected URL: https://docs.lammps.org/fix_wall_ees.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_wall.html)

XIOC detected URL: https://docs.lammps.org/fix_wall.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_wall_body_polyhedron.html)

XIOC detected URL: https://docs.lammps.org/fix_wall_body_polyhedron.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/bond_style.html)

XIOC detected URL: https://docs.lammps.org/bond_style.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/Howto_bpm.html)

XIOC detected URL: https://docs.lammps.org/Howto_bpm.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/bond_bpm_rotational.html),

XIOC detected URL: https://docs.lammps.org/bond_bpm_rotational.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/compute_property_local.html).

XIOC detected URL: https://docs.lammps.org/compute_property_local.html).

extracted_from_files

URL

detected URL: https://docs.lammps.org/unfix.html),

XIOC detected URL: https://docs.lammps.org/unfix.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_widom.html)

XIOC detected URL: https://docs.lammps.org/fix_widom.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_wall_srd.html)

XIOC detected URL: https://docs.lammps.org/fix_wall_srd.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_qeq.html),

XIOC detected URL: https://docs.lammps.org/fix_qeq.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_efield.html)

XIOC detected URL: https://docs.lammps.org/fix_efield.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_comb.html).

XIOC detected URL: https://docs.lammps.org/pair_comb.html).

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_reaxff.html)

XIOC detected URL: https://docs.lammps.org/pair_reaxff.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/compute_msd.html)

XIOC detected URL: https://docs.lammps.org/compute_msd.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_sw_angle_table.html)

XIOC detected URL: https://docs.lammps.org/pair_sw_angle_table.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/compute_property_local.html)

XIOC detected URL: https://docs.lammps.org/compute_property_local.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/compute_dilatation_atom.html)

XIOC detected URL: https://docs.lammps.org/compute_dilatation_atom.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/compute_damage_atom.html),

XIOC detected URL: https://docs.lammps.org/compute_damage_atom.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_peri.html):

XIOC detected URL: https://docs.lammps.org/pair_peri.html):

extracted_from_files

URL

detected URL: https://docs.lammps.org/Mitchell

XIOC detected URL: https://docs.lammps.org/Mitchell

extracted_from_files

URL

detected URL: https://docs.lammps.org/PDF/PDLammps_overview.pdf)

XIOC detected URL: https://docs.lammps.org/PDF/PDLammps_overview.pdf)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_peri.html).

XIOC detected URL: https://docs.lammps.org/pair_peri.html).

extracted_from_files

URL

detected URL: https://docs.lammps.org/compute_pe_atom.html)

XIOC detected URL: https://docs.lammps.org/compute_pe_atom.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_property_atom.html)

XIOC detected URL: https://docs.lammps.org/fix_property_atom.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_add_heat.html),

XIOC detected URL: https://docs.lammps.org/fix_add_heat.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/thermo_style.html)

XIOC detected URL: https://docs.lammps.org/thermo_style.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/thermo.html),

XIOC detected URL: https://docs.lammps.org/thermo.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/compute.html)

XIOC detected URL: https://docs.lammps.org/compute.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_numdiff_virial.html),

XIOC detected URL: https://docs.lammps.org/fix_numdiff_virial.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/dynamical_matrix.html),

XIOC detected URL: https://docs.lammps.org/dynamical_matrix.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/compute_modify.html)

XIOC detected URL: https://docs.lammps.org/compute_modify.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_ave_time.html),

XIOC detected URL: https://docs.lammps.org/fix_ave_time.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/compute_rdf.html),

XIOC detected URL: https://docs.lammps.org/compute_rdf.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/neighbor.html).

XIOC detected URL: https://docs.lammps.org/neighbor.html).

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_sw.html).

XIOC detected URL: https://docs.lammps.org/pair_sw.html).

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_meso_move.html).

XIOC detected URL: https://docs.lammps.org/fix_meso_move.html).

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_adapt_fep.html)

XIOC detected URL: https://docs.lammps.org/fix_adapt_fep.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/atom_modify.html)

XIOC detected URL: https://docs.lammps.org/atom_modify.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/variable.html)

XIOC detected URL: https://docs.lammps.org/variable.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_lj.html).

XIOC detected URL: https://docs.lammps.org/pair_lj.html).

extracted_from_files

URL

detected URL: https://docs.lammps.org/compute_vacf.html),

XIOC detected URL: https://docs.lammps.org/compute_vacf.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_fep_soft.html)

XIOC detected URL: https://docs.lammps.org/pair_fep_soft.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/neigh_modify.html)

XIOC detected URL: https://docs.lammps.org/neigh_modify.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_rigid.html),

XIOC detected URL: https://docs.lammps.org/fix_rigid.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_meso_move.html),

XIOC detected URL: https://docs.lammps.org/fix_meso_move.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/minimize.html).

XIOC detected URL: https://docs.lammps.org/minimize.html).

extracted_from_files

URL

detected URL: https://docs.lammps.org/restart.html).

XIOC detected URL: https://docs.lammps.org/restart.html).

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_oxdna2.html),

XIOC detected URL: https://docs.lammps.org/pair_oxdna2.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_oxdna.html),

XIOC detected URL: https://docs.lammps.org/pair_oxdna.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/bond_oxdna.html),

XIOC detected URL: https://docs.lammps.org/bond_oxdna.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/atom_style.html)).

XIOC detected URL: https://docs.lammps.org/atom_style.html)).

extracted_from_files

URL

detected URL: https://docs.lammps.org/bond_oxdna.html)).

XIOC detected URL: https://docs.lammps.org/bond_oxdna.html)).

extracted_from_files

URL

detected URL: https://docs.lammps.org/Sulc32

XIOC detected URL: https://docs.lammps.org/Sulc32

extracted_from_files

URL

detected URL: https://docs.lammps.org/compute_msd_chunk.html)

XIOC detected URL: https://docs.lammps.org/compute_msd_chunk.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/thermo_modify.html)).

XIOC detected URL: https://docs.lammps.org/thermo_modify.html)).

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_tri_lj.html)

XIOC detected URL: https://docs.lammps.org/pair_tri_lj.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_reaxff.html).

XIOC detected URL: https://docs.lammps.org/pair_reaxff.html).

extracted_from_files

URL

detected URL: https://docs.lammps.org/compute_event_displace.html),

XIOC detected URL: https://docs.lammps.org/compute_event_displace.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_deposit.html).

XIOC detected URL: https://docs.lammps.org/fix_deposit.html).

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_ave_chunk.html).

XIOC detected URL: https://docs.lammps.org/fix_ave_chunk.html).

extracted_from_files

URL

detected URL: https://docs.lammps.org/neb.html),

XIOC detected URL: https://docs.lammps.org/neb.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/neb.html)

XIOC detected URL: https://docs.lammps.org/neb.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/compute_temp_eff.html),

XIOC detected URL: https://docs.lammps.org/compute_temp_eff.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_dpd_fdt.html)

XIOC detected URL: https://docs.lammps.org/pair_dpd_fdt.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_aveforce.html)

XIOC detected URL: https://docs.lammps.org/fix_aveforce.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/atc_filter_type.html)

XIOC detected URL: https://docs.lammps.org/atc_filter_type.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/prd.html)

XIOC detected URL: https://docs.lammps.org/prd.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/minimize.html),

XIOC detected URL: https://docs.lammps.org/minimize.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/min_style.html),

XIOC detected URL: https://docs.lammps.org/min_style.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/units.html)

XIOC detected URL: https://docs.lammps.org/units.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/create_atoms.html)

XIOC detected URL: https://docs.lammps.org/create_atoms.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/velocity.html)),

XIOC detected URL: https://docs.lammps.org/velocity.html)),

extracted_from_files

URL

detected URL: https://github.com/noid-group/BOCS)

XIOC detected URL: https://github.com/noid-group/BOCS)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_nh.html)

XIOC detected URL: https://docs.lammps.org/fix_nh.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/improper_coeff.html)

XIOC detected URL: https://docs.lammps.org/improper_coeff.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/compute_temp.html),

XIOC detected URL: https://docs.lammps.org/compute_temp.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/velocity.html)

XIOC detected URL: https://docs.lammps.org/velocity.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/atc_fix.html)

XIOC detected URL: https://docs.lammps.org/atc_fix.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/region.html)

XIOC detected URL: https://docs.lammps.org/region.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/create_atoms.html),

XIOC detected URL: https://docs.lammps.org/create_atoms.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/echo.html)

XIOC detected URL: https://docs.lammps.org/echo.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/log.html)

XIOC detected URL: https://docs.lammps.org/log.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_sph_taitwater.html)

XIOC detected URL: https://docs.lammps.org/pair_sph_taitwater.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_sph_rhosum.html),

XIOC detected URL: https://docs.lammps.org/pair_sph_rhosum.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_brownian.html)

XIOC detected URL: https://docs.lammps.org/pair_brownian.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/compute_temp_deform.html),

XIOC detected URL: https://docs.lammps.org/compute_temp_deform.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/compute_temp_profile.html),

XIOC detected URL: https://docs.lammps.org/compute_temp_profile.html),

extracted_from_files

URL

detected URL: https://www.quantum-espresso.org)

XIOC detected URL: https://www.quantum-espresso.org)

extracted_from_files

URL

detected URL: https://docs.lammps.org/compute_pair.html)

XIOC detected URL: https://docs.lammps.org/compute_pair.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/improper_style.html)

XIOC detected URL: https://docs.lammps.org/improper_style.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/read_data.html)

XIOC detected URL: https://docs.lammps.org/read_data.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_polarize.html),

XIOC detected URL: https://docs.lammps.org/fix_polarize.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_modify.html)

XIOC detected URL: https://docs.lammps.org/pair_modify.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/atom_style.html).

XIOC detected URL: https://docs.lammps.org/atom_style.html).

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_spring_self.html),

XIOC detected URL: https://docs.lammps.org/fix_spring_self.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_buck.html)

XIOC detected URL: https://docs.lammps.org/pair_buck.html)

extracted_from_files

URL

detected URL: https://github.com/scafacos/scafacos.git

XIOC detected URL: https://github.com/scafacos/scafacos.git

extracted_from_files

URL

detected URL: http://scafacos.de

XIOC detected URL: http://scafacos.de

extracted_from_files

URL

detected URL: http://www.scafacos.de

XIOC detected URL: http://www.scafacos.de

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_electrode.html).

XIOC detected URL: https://docs.lammps.org/fix_electrode.html).

extracted_from_files

URL

detected URL: https://docs.lammps.org/Speed_tips.html)

XIOC detected URL: https://docs.lammps.org/Speed_tips.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/dump.html)

XIOC detected URL: https://docs.lammps.org/dump.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/units.html).

XIOC detected URL: https://docs.lammps.org/units.html).

extracted_from_files

URL

detected URL: https://docs.lammps.org/Howto_triclinic.html),

XIOC detected URL: https://docs.lammps.org/Howto_triclinic.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/dump.html),

XIOC detected URL: https://docs.lammps.org/dump.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/dump.html).

XIOC detected URL: https://docs.lammps.org/dump.html).

extracted_from_files

URL

detected URL: https://docs.lammps.org/Howto_output.html)

XIOC detected URL: https://docs.lammps.org/Howto_output.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_spring_rg.html),

XIOC detected URL: https://docs.lammps.org/fix_spring_rg.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/Run_output.html)

XIOC detected URL: https://docs.lammps.org/Run_output.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_recenter.html),

XIOC detected URL: https://docs.lammps.org/fix_recenter.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_langevin.html)

XIOC detected URL: https://docs.lammps.org/fix_langevin.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_atom_swap.html)

XIOC detected URL: https://docs.lammps.org/fix_atom_swap.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/Run_options.html).

XIOC detected URL: https://docs.lammps.org/Run_options.html).

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_smd_wall_surface.html)

XIOC detected URL: https://docs.lammps.org/fix_smd_wall_surface.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_smd_move_triangulated_surface.html),

XIOC detected URL: https://docs.lammps.org/fix_smd_move_triangulated_surface.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_smd_wall_surface.html).

XIOC detected URL: https://docs.lammps.org/fix_smd_wall_surface.html).

extracted_from_files

URL

detected URL: https://docs.lammps.org/kspace_modify.html)

XIOC detected URL: https://docs.lammps.org/kspace_modify.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/run.html),

XIOC detected URL: https://docs.lammps.org/run.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/minimize.html)

XIOC detected URL: https://docs.lammps.org/minimize.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/write_restart.html)

XIOC detected URL: https://docs.lammps.org/write_restart.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_property_atom.html).

XIOC detected URL: https://docs.lammps.org/fix_property_atom.html).

extracted_from_files

URL

detected URL: https://docs.lammps.org/delete_bonds.html)

XIOC detected URL: https://docs.lammps.org/delete_bonds.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/read_restart.html)

XIOC detected URL: https://docs.lammps.org/read_restart.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_rheo.html),

XIOC detected URL: https://docs.lammps.org/pair_rheo.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_rheo.html),

XIOC detected URL: https://docs.lammps.org/fix_rheo.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/compute_pressure.html),

XIOC detected URL: https://docs.lammps.org/compute_pressure.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_poems.html).

XIOC detected URL: https://docs.lammps.org/fix_poems.html).

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_evaporate.html)),

XIOC detected URL: https://docs.lammps.org/fix_evaporate.html)),

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_nve.html)

XIOC detected URL: https://docs.lammps.org/fix_nve.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_awpmd.html)

XIOC detected URL: https://docs.lammps.org/pair_awpmd.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/angle_coeff.html)

XIOC detected URL: https://docs.lammps.org/angle_coeff.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/dihedral_coeff.html)

XIOC detected URL: https://docs.lammps.org/dihedral_coeff.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_multi_lucy.html)

XIOC detected URL: https://docs.lammps.org/pair_multi_lucy.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/temper.html)

XIOC detected URL: https://docs.lammps.org/temper.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/compute_rheo_property_atom.html)

XIOC detected URL: https://docs.lammps.org/compute_rheo_property_atom.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_lj_cut_tip4p.html)

XIOC detected URL: https://docs.lammps.org/pair_lj_cut_tip4p.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/run_style.html)

XIOC detected URL: https://docs.lammps.org/run_style.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_lj_cut_coul.html)

XIOC detected URL: https://docs.lammps.org/pair_lj_cut_coul.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/atc_source.html)

XIOC detected URL: https://docs.lammps.org/atc_source.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/atc_fix_flux.html)

XIOC detected URL: https://docs.lammps.org/atc_fix_flux.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/angle_write.html)

XIOC detected URL: https://docs.lammps.org/angle_write.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/Sulc1

XIOC detected URL: https://docs.lammps.org/Sulc1

extracted_from_files

URL

detected URL: https://docs.lammps.org/compute_bond_local.html),

XIOC detected URL: https://docs.lammps.org/compute_bond_local.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix.html)

XIOC detected URL: https://docs.lammps.org/fix.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/variable.html).

XIOC detected URL: https://docs.lammps.org/variable.html).

extracted_from_files

URL

detected URL: https://docs.lammps.org/compute_erotate_sphere.html)

XIOC detected URL: https://docs.lammps.org/compute_erotate_sphere.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fitpod_command.html),

XIOC detected URL: https://docs.lammps.org/fitpod_command.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_pod.html),

XIOC detected URL: https://docs.lammps.org/pair_pod.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/compute_contact_atom.html)

XIOC detected URL: https://docs.lammps.org/compute_contact_atom.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/compute_coord_atom.html)

XIOC detected URL: https://docs.lammps.org/compute_coord_atom.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_oxrna2.html),

XIOC detected URL: https://docs.lammps.org/pair_oxrna2.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/units.html),

XIOC detected URL: https://docs.lammps.org/units.html),

extracted_from_files

URL

detected URL: https://openkim.org/browse/models/by-type](https://openkim.org/browse/models/by-type)

XIOC detected URL: https://openkim.org/browse/models/by-type](https://openkim.org/browse/models/by-type)

extracted_from_files

URL

detected URL: https://openkim.org

XIOC detected URL: https://openkim.org

extracted_from_files

URL

detected URL: https://www.ctcms.nist.gov/potentials

XIOC detected URL: https://www.ctcms.nist.gov/potentials

extracted_from_files

URL

detected URL: https://docs.lammps.org/mass.html)

XIOC detected URL: https://docs.lammps.org/mass.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_pod.html)

XIOC detected URL: https://docs.lammps.org/pair_pod.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/dihedral_zero.html)

XIOC detected URL: https://docs.lammps.org/dihedral_zero.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/dihedral_none.html)

XIOC detected URL: https://docs.lammps.org/dihedral_none.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_coeff.html)

XIOC detected URL: https://docs.lammps.org/pair_coeff.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/dihedral_multi_harmonic.html)

XIOC detected URL: https://docs.lammps.org/dihedral_multi_harmonic.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/dihedral_lepton.html)

XIOC detected URL: https://docs.lammps.org/dihedral_lepton.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/dihedral_helix.html)

XIOC detected URL: https://docs.lammps.org/dihedral_helix.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/dihedral_harmonic.html)

XIOC detected URL: https://docs.lammps.org/dihedral_harmonic.html)

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URL

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XIOC detected URL: https://docs.lammps.org/dihedral_fourier.html)

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XIOC detected URL: https://docs.lammps.org/dihedral_cosine_squared_restricted.html)

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XIOC detected URL: https://docs.lammps.org/dihedral_cosine_shift_exp.html)

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XIOC detected URL: https://docs.lammps.org/atc_hardy_computes.html)

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XIOC detected URL: https://docs.lammps.org/fix_atc.html).

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XIOC detected URL: https://docs.lammps.org/fix_atc.html)

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XIOC detected URL: https://docs.lammps.org/dihedral_table.html)

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XIOC detected URL: https://docs.lammps.org/dihedral_spherical.html)

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XIOC detected URL: https://docs.lammps.org/dihedral_opls.html)

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XIOC detected URL: https://docs.lammps.org/dihedral_nharmonic.html)

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XIOC detected URL: https://docs.lammps.org/Packages.html)

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XIOC detected URL: https://docs.lammps.org/Classes_atom.html)

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XIOC detected URL: https://docs.lammps.org/pair_style.html))

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XIOC detected URL: https://docs.lammps.org/pair_body_rounded_polyhedron.html)

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XIOC detected URL: https://docs.lammps.org/pair_dielectric.html)

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XIOC detected URL: https://docs.lammps.org/Howto_spherical.html)

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XIOC detected URL: https://docs.lammps.org/read_data.html)).

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XIOC detected URL: https://docs.lammps.org/molecule.html)

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XIOC detected URL: https://docs.lammps.org/set.html)

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XIOC detected URL: https://docs.lammps.org/pair_style.html),

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XIOC detected URL: https://docs.lammps.org/Modify_atom.html).

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XIOC detected URL: https://docs.lammps.org/fix_nph_sphere.html),

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XIOC detected URL: https://docs.lammps.org/pair_dpd.html)

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XIOC detected URL: https://docs.lammps.org/fix_polarize.html).

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XIOC detected URL: https://docs.lammps.org/fix_wall_region.html)

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XIOC detected URL: https://docs.lammps.org/fix_wall_reflect.html),

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XIOC detected URL: https://docs.lammps.org/Howto_output.html).

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XIOC detected URL: https://docs.lammps.org/boundary.html)

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XIOC detected URL: https://docs.lammps.org/pair_lubricateU.html)

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XIOC detected URL: https://simtk.org/projects/lepton

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XIOC detected URL: https://docs.lammps.org/pair_colloid.html)

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XIOC detected URL: https://docs.lammps.org/fix_dt_reset.html)).

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XIOC detected URL: https://docs.lammps.org/compute_displace_atom.html)

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XIOC detected URL: https://docs.lammps.org/compute_displace_atom.html).

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XIOC detected URL: https://docs.lammps.org/pair_tracker.html)

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XIOC detected URL: https://docs.lammps.org/fix_dt_reset.html)

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XIOC detected URL: http://li.mit.edu/Archive/Graphics/A/)

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XIOC detected URL: https://docs.lammps.org/dump_image.html)

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XIOC detected URL: https://docs.lammps.org/pair_smd_triangulated_surface.html)

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XIOC detected URL: https://docs.lammps.org/compute_coord_atom.html),

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XIOC detected URL: https://docs.lammps.org/compute_orientorder_atom.html),

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XIOC detected URL: https://docs.lammps.org/pair_lebedeva_z.html)

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XIOC detected URL: https://docs.lammps.org/pair_ilp_graphene_hbn.html).

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XIOC detected URL: https://www.vtk.org/

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XIOC detected URL: https://facebook.github.io/zstd/

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XIOC detected URL: https://docs.lammps.org/Speed.html)

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XIOC detected URL: https://docs.lammps.org/Run_options.html)

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XIOC detected URL: https://docs.lammps.org/compute_smd_triangle_vertices.html),

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XIOC detected URL: https://docs.lammps.org/Howto_triclinic.html)

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XIOC detected URL: https://docs.lammps.org/reset_atoms.html)

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XIOC detected URL: https://docs.lammps.org/neighbor.html)

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XIOC detected URL: https://docs.lammps.org/run.html)

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XIOC detected URL: https://docs.lammps.org/timestep.html),

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XIOC detected URL: https://docs.lammps.org/Speed_omp.html)

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XIOC detected URL: https://docs.lammps.org/fix_modify.html)

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XIOC detected URL: https://docs.lammps.org/atc_mesh_delete_elements.html)

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XIOC detected URL: https://docs.lammps.org/kspace_style.html)

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XIOC detected URL: https://docs.lammps.org/fix_pour.html).

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XIOC detected URL: https://docs.lammps.org/compute_temp_asphere.html),

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XIOC detected URL: https://docs.lammps.org/pair_gayberne.html),

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XIOC detected URL: https://arxiv.org/abs/1308.6382/).

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XIOC detected URL: https://docs.lammps.org/undump.html)

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XIOC detected URL: https://nongnu.org/h5md/)

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XIOC detected URL: https://www.hdfgroup.org/solutions/hdf5/)

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XIOC detected URL: https://docs.lammps.org/atc_mesh_create_faceset_plane.html)

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XIOC detected URL: https://docs.lammps.org/min_spin.html),

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XIOC detected URL: https://docs.lammps.org/min_spin.html)

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XIOC detected URL: https://docs.lammps.org/pair_gayberne.html)

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XIOC detected URL: https://docs.lammps.org/pair_resquared.html),

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XIOC detected URL: https://docs.lammps.org/pair_dpd.html).

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XIOC detected URL: https://docs.lammps.org/pair_mesodpd.html)

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XIOC detected URL: https://docs.lammps.org/Monaghan

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XIOC detected URL: https://docs.lammps.org/compute_ke_rigid.html)

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XIOC detected URL: https://docs.lammps.org/fix_rigid.html)

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XIOC detected URL: https://docs.lammps.org/Howto_structured_data.html).

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XIOC detected URL: https://docs.lammps.org/pair_mesodpd.html),

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XIOC detected URL: https://docs.lammps.org/fix_deform.html).

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XIOC detected URL: https://docs.lammps.org/hyper.html)

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XIOC detected URL: https://docs.lammps.org/thermo_modify.html),

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XIOC detected URL: https://docs.lammps.org/fix_dt_reset.html))

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XIOC detected URL: https://docs.lammps.org/fix_shake.html),

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XIOC detected URL: https://docs.lammps.org/fix_temp_rescale.html),

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XIOC detected URL: https://docs.lammps.org/fix_modify.html),

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XIOC detected URL: https://docs.lammps.org/fix_langevin_eff.html),

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XIOC detected URL: https://docs.lammps.org/tad.html),

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XIOC detected URL: https://docs.lammps.org/pair_sw.html),

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XIOC detected URL: https://gitlab.mpcdf.mpg.de/votca/votca/-/tree/master/csg-tutorials/spce/3body_sw

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XIOC detected URL: https://docs.lammps.org/angle_table.html)

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XIOC detected URL: https://docs.lammps.org/pair_sw.html)

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XIOC detected URL: https://docs.lammps.org/python.html)

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XIOC detected URL: https://docs.lammps.org/molecule.html).

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XIOC detected URL: https://docs.lammps.org/create_box.html),

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XIOC detected URL: https://docs.lammps.org/processors.html)

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XIOC detected URL: https://docs.lammps.org/compute_temp_region.html),

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XIOC detected URL: https://docs.lammps.org/pair_threebody_table.html)

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XIOC detected URL: https://docs.lammps.org/fix_indent.html).

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XIOC detected URL: https://docs.lammps.org/jump.html)

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XIOC detected URL: https://docs.lammps.org/read_dump.html)

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XIOC detected URL: https://docs.lammps.org/Howto_nemd.html)

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XIOC detected URL: https://github.com/CompPhysVienna/n2p2)_.

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XIOC detected URL: https://docs.lammps.org/reset_timestep.html)

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XIOC detected URL: https://docs.lammps.org/fix_langevin.html).

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XIOC detected URL: https://github.com/CompPhysVienna/n2p2/issues)_.

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XIOC detected URL: https://docs.lammps.org/pair_hybrid.html).

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XIOC detected URL: https://www.uni-goettingen.de/de/560580.html)_.

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XIOC detected URL: https://compphysvienna.github.io/n2p2/)_

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XIOC detected URL: https://docs.lammps.org/reset_timestep.html).

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XIOC detected URL: https://docs.lammps.org/fix_langevin.html),

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XIOC detected URL: https://docs.lammps.org/fix_gravity.html),

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URL

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XIOC detected URL: https://docs.lammps.org/fix_efield.html),

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XIOC detected URL: https://docs.lammps.org/fix_nh.html)),

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XIOC detected URL: https://docs.lammps.org/write_coeff.html)

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XIOC detected URL: https://docs.lammps.org/fix_alchemy.html).

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XIOC detected URL: https://docs.lammps.org/fix_mol_swap.html),

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XIOC detected URL: https://docs.lammps.org/neighbor.html),

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XIOC detected URL: https://docs.lammps.org/pair_hybrid.html)

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XIOC detected URL: https://docs.lammps.org/compute_smd_tlsph_stress.html)

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XIOC detected URL: https://docs.lammps.org/compute_smd_plastic_strain.html),

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XIOC detected URL: https://docs.lammps.org/pair_airebo.html),

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XIOC detected URL: https://docs.lammps.org/print.html)

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XIOC detected URL: https://docs.lammps.org/compute_tally.html)

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XIOC detected URL: https://docs.lammps.org/bond_harmonic_shift_cut.html)

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XIOC detected URL: https://docs.lammps.org/bond_harmonic.html),

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XIOC detected URL: https://docs.lammps.org/delete_bonds.html),

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XIOC detected URL: https://docs.lammps.org/bond_harmonic.html)

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XIOC detected URL: https://docs.lammps.org/fix_manifoldforce.html)

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XIOC detected URL: https://docs.lammps.org/compute_com.html)

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XIOC detected URL: https://docs.lammps.org/compute_heat_flux.html).

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XIOC detected URL: https://docs.lammps.org/fix_rigid.html).

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XIOC detected URL: https://docs.lammps.org/fix_shake.html)

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XIOC detected URL: https://docs.lammps.org/pair_lj.html)

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XIOC detected URL: https://docs.lammps.org/compute_chunk_spread_atom.html)

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XIOC detected URL: https://docs.lammps.org/compute_reduce.html),

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XIOC detected URL: https://docs.lammps.org/compute_chunk_atom.html),

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detected URL: https://docs.lammps.org/Howto_amoeba.html)

XIOC detected URL: https://docs.lammps.org/Howto_amoeba.html)

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XIOC detected URL: https://docs.lammps.org/fix_langevin.html))

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XIOC detected URL: https://docs.lammps.org/fix_temp_berendsen.html))

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XIOC detected URL: https://docs.lammps.org/units.html)),

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XIOC detected URL: https://docs.lammps.org/pair_lj_smooth_linear.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_line_lj.html)

XIOC detected URL: https://docs.lammps.org/pair_line_lj.html)

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URL

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XIOC detected URL: https://docs.lammps.org/pair_reaxff.html),

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URL

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XIOC detected URL: https://docs.lammps.org/dynamical_matrix.html)

extracted_from_files

URL

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XIOC detected URL: https://docs.lammps.org/compute_stress_atom.html)

extracted_from_files

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XIOC detected URL: https://link.aps.org/doi/10.1103/PhysRevE.92.043303)

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URL

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XIOC detected URL: https://ipi-code.org](https://ipi-code.org)

extracted_from_files

URL

detected URL: https://docs.lammps.org/atom_style.html)

XIOC detected URL: https://docs.lammps.org/atom_style.html)

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URL

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XIOC detected URL: https://docs.lammps.org/run_style.html).

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URL

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XIOC detected URL: https://docs.lammps.org/PDF/pair_resquared_extra.pdf).

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URL

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XIOC detected URL: https://docs.lammps.org/Everaers3

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XIOC detected URL: https://docs.lammps.org/fix_temp_berendsen.html),

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URL

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XIOC detected URL: https://docs.lammps.org/pair_rheo.html)

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XIOC detected URL: https://docs.lammps.org/Howto_bpm.html)).

extracted_from_files

URL

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XIOC detected URL: https://docs.lammps.org/compute_rheo_property_atom.html).

extracted_from_files

URL

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XIOC detected URL: https://docs.lammps.org/compute_nbond_atom.html).

extracted_from_files

URL

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XIOC detected URL: https://www.ks.uiuc.edu/Research/vmd)

extracted_from_files

URL

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XIOC detected URL: https://docs.lammps.org/pair_coul_shield.html).

extracted_from_files

URL

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XIOC detected URL: https://docs.lammps.org/pair_ilp_tmd.html),

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URL

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XIOC detected URL: https://docs.lammps.org/fix_mdi_qm.html)

extracted_from_files

URL

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XIOC detected URL: https://docs.lammps.org/create_box.html)

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URL

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XIOC detected URL: https://molssi-mdi.github.io/MDI_Library/html/mdi_standard.html)

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URL

detected URL: https://molssi-mdi.github.io/MDI_Library/html/index.html

XIOC detected URL: https://molssi-mdi.github.io/MDI_Library/html/index.html

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XIOC detected URL: https://docs.lammps.org/pair_born.html)

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XIOC detected URL: https://doi.org/10.1007/s00366-006-0026-x))

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XIOC detected URL: https://docs.lammps.org/fix_shardlow.html),

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XIOC detected URL: https://docs.lammps.org/fix_eos_table_rx.html),

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URL

detected URL: https://docs.lammps.org/pair_kim.html)

XIOC detected URL: https://docs.lammps.org/pair_kim.html)

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URL

detected URL: https://docs.lammps.org/pair_harmonic_cut.html)

XIOC detected URL: https://docs.lammps.org/pair_harmonic_cut.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_gauss.html)

XIOC detected URL: https://docs.lammps.org/pair_gauss.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_coul_slater.html)

XIOC detected URL: https://docs.lammps.org/pair_coul_slater.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_mdf.html)

XIOC detected URL: https://docs.lammps.org/pair_mdf.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_born_gauss.html)

XIOC detected URL: https://docs.lammps.org/pair_born_gauss.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_dipole.html)

XIOC detected URL: https://docs.lammps.org/pair_dipole.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_lj_pirani.html)

XIOC detected URL: https://docs.lammps.org/pair_lj_pirani.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_gromacs.html)

XIOC detected URL: https://docs.lammps.org/pair_gromacs.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_lj_expand.html)

XIOC detected URL: https://docs.lammps.org/pair_lj_expand.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_lj_cubic.html)

XIOC detected URL: https://docs.lammps.org/pair_lj_cubic.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_class2.html)

XIOC detected URL: https://docs.lammps.org/pair_class2.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_lj96.html)

XIOC detected URL: https://docs.lammps.org/pair_lj96.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_pedone.html)

XIOC detected URL: https://docs.lammps.org/pair_pedone.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_pace.html)

XIOC detected URL: https://docs.lammps.org/pair_pace.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_nm.html)

XIOC detected URL: https://docs.lammps.org/pair_nm.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_morse.html)

XIOC detected URL: https://docs.lammps.org/pair_morse.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_mie.html)

XIOC detected URL: https://docs.lammps.org/pair_mie.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_meam.html)

XIOC detected URL: https://docs.lammps.org/pair_meam.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_lubricate.html)

XIOC detected URL: https://docs.lammps.org/pair_lubricate.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_soft.html)

XIOC detected URL: https://docs.lammps.org/pair_soft.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_spin_neel.html)

XIOC detected URL: https://docs.lammps.org/pair_spin_neel.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_spin_magelec.html)

XIOC detected URL: https://docs.lammps.org/pair_spin_magelec.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_spin_exchange.html)

XIOC detected URL: https://docs.lammps.org/pair_spin_exchange.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_spin_dmi.html)

XIOC detected URL: https://docs.lammps.org/pair_spin_dmi.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_snap.html)

XIOC detected URL: https://docs.lammps.org/pair_snap.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_quip.html)

XIOC detected URL: https://docs.lammps.org/pair_quip.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/bond_class2.html)

XIOC detected URL: https://docs.lammps.org/bond_class2.html)

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XIOC detected URL: https://docs.lammps.org/Howto_type_labels.html).

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detected URL: https://docs.lammps.org/pair_soft.html)).

XIOC detected URL: https://docs.lammps.org/pair_soft.html)).

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URL

detected URL: https://docs.lammps.org/pair_lubricate.html)).

XIOC detected URL: https://docs.lammps.org/pair_lubricate.html)).

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_wf_cut.html)

XIOC detected URL: https://docs.lammps.org/pair_wf_cut.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_ufm.html)

XIOC detected URL: https://docs.lammps.org/pair_ufm.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_table.html)

XIOC detected URL: https://docs.lammps.org/pair_table.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/bond_harmonic_shift.html)

XIOC detected URL: https://docs.lammps.org/bond_harmonic_shift.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/bond_harmonic_restrain.html)

XIOC detected URL: https://docs.lammps.org/bond_harmonic_restrain.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/bond_gromos.html)

XIOC detected URL: https://docs.lammps.org/bond_gromos.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/bond_gaussian.html)

XIOC detected URL: https://docs.lammps.org/bond_gaussian.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/bond_fene_expand.html)

XIOC detected URL: https://docs.lammps.org/bond_fene_expand.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/bond_fene.html)

XIOC detected URL: https://docs.lammps.org/bond_fene.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/angle_cosine.html)

XIOC detected URL: https://docs.lammps.org/angle_cosine.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/angle_charmm.html)

XIOC detected URL: https://docs.lammps.org/angle_charmm.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/angle_harmonic.html)

XIOC detected URL: https://docs.lammps.org/angle_harmonic.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/angle_hybrid.html)

XIOC detected URL: https://docs.lammps.org/angle_hybrid.html)

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URL

detected URL: https://docs.lammps.org/bond_nonlinear.html)

XIOC detected URL: https://docs.lammps.org/bond_nonlinear.html)

extracted_from_files

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detected URL: https://docs.lammps.org/bond_morse.html)

XIOC detected URL: https://docs.lammps.org/bond_morse.html)

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URL

detected URL: https://docs.lammps.org/bond_mm3.html)

XIOC detected URL: https://docs.lammps.org/bond_mm3.html)

extracted_from_files

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detected URL: https://docs.lammps.org/angle_fourier_simple.html)

XIOC detected URL: https://docs.lammps.org/angle_fourier_simple.html)

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URL

detected URL: https://docs.lammps.org/angle_fourier.html)

XIOC detected URL: https://docs.lammps.org/angle_fourier.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/angle_dipole.html)

XIOC detected URL: https://docs.lammps.org/angle_dipole.html)

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detected URL: https://docs.lammps.org/angle_cosine_squared_restricted.html)

XIOC detected URL: https://docs.lammps.org/angle_cosine_squared_restricted.html)

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detected URL: https://docs.lammps.org/angle_cosine_squared.html)

XIOC detected URL: https://docs.lammps.org/angle_cosine_squared.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/angle_cosine_periodic.html)

XIOC detected URL: https://docs.lammps.org/angle_cosine_periodic.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/angle_cosine_delta.html)

XIOC detected URL: https://docs.lammps.org/angle_cosine_delta.html)

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URL

detected URL: https://docs.lammps.org/atom_style.html)),

XIOC detected URL: https://docs.lammps.org/atom_style.html)),

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URL

detected URL: https://docs.lammps.org/angle_spica.html)

XIOC detected URL: https://docs.lammps.org/angle_spica.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/angle_quartic.html)

XIOC detected URL: https://docs.lammps.org/angle_quartic.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/angle_mwlc.html)

XIOC detected URL: https://docs.lammps.org/angle_mwlc.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/angle_mm3.html)

XIOC detected URL: https://docs.lammps.org/angle_mm3.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/angle_gaussian.html)

XIOC detected URL: https://docs.lammps.org/angle_gaussian.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/tad.html)

XIOC detected URL: https://docs.lammps.org/tad.html)

extracted_from_files

URL

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XIOC detected URL: https://docs.lammps.org/pair_buck6d_coul_gauss.html)

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URL

detected URL: https://docs.lammps.org/compute_ti.html),

XIOC detected URL: https://docs.lammps.org/compute_ti.html),

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URL

detected URL: https://docs.lammps.org/write_restart.html).

XIOC detected URL: https://docs.lammps.org/write_restart.html).

extracted_from_files

URL

detected URL: https://docs.lammps.org/write_data.html),

XIOC detected URL: https://docs.lammps.org/write_data.html),

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URL

detected URL: https://docs.lammps.org/pair_oxdna.html)).

XIOC detected URL: https://docs.lammps.org/pair_oxdna.html)).

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_oxdna.html))

XIOC detected URL: https://docs.lammps.org/pair_oxdna.html))

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URL

detected URL: https://docs.lammps.org/Ouldridge0

XIOC detected URL: https://docs.lammps.org/Ouldridge0

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URL

detected URL: https://docs.lammps.org/units.html)).

XIOC detected URL: https://docs.lammps.org/units.html)).

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_zbl.html).

XIOC detected URL: https://docs.lammps.org/pair_zbl.html).

extracted_from_files

URL

detected URL: https://docs.lammps.org/set.html).

XIOC detected URL: https://docs.lammps.org/set.html).

extracted_from_files

URL

detected URL: https://docs.lammps.org/compute_temp_com.html).

XIOC detected URL: https://docs.lammps.org/compute_temp_com.html).

extracted_from_files

URL

detected URL: https://docs.lammps.org/compute_orientorder_atom.html)

XIOC detected URL: https://docs.lammps.org/compute_orientorder_atom.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/compute_cluster_atom.html)

XIOC detected URL: https://docs.lammps.org/compute_cluster_atom.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_write.html)

XIOC detected URL: https://docs.lammps.org/pair_write.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_table.html),

XIOC detected URL: https://docs.lammps.org/pair_table.html),

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URL

detected URL: https://docs.lammps.org/pair_python.html),

XIOC detected URL: https://docs.lammps.org/pair_python.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/variable.html),

XIOC detected URL: https://docs.lammps.org/variable.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_lj_cut_tip4p.html).

XIOC detected URL: https://docs.lammps.org/pair_lj_cut_tip4p.html).

extracted_from_files

URL

detected URL: https://gle4md.org/](https://gle4md.org/)

XIOC detected URL: https://gle4md.org/](https://gle4md.org/)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_gld.html)

XIOC detected URL: https://docs.lammps.org/fix_gld.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_gle.html).

XIOC detected URL: https://docs.lammps.org/fix_gle.html).

extracted_from_files

URL

detected URL: https://docs.lammps.org/read_restart.html),

XIOC detected URL: https://docs.lammps.org/read_restart.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_ave_chunk.html)

XIOC detected URL: https://docs.lammps.org/fix_ave_chunk.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/compute_msd_chunk.html).

XIOC detected URL: https://docs.lammps.org/compute_msd_chunk.html).

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_eam.html),

XIOC detected URL: https://docs.lammps.org/pair_eam.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_efield_lepton.html)

XIOC detected URL: https://docs.lammps.org/fix_efield_lepton.html)

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URL

detected URL: https://docs.lammps.org/fix_qeq_reaxff.html),

XIOC detected URL: https://docs.lammps.org/fix_qeq_reaxff.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/atc_mesh_create.html)

XIOC detected URL: https://docs.lammps.org/atc_mesh_create.html)

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URL

detected URL: https://docs.lammps.org/compute_bond.html),

XIOC detected URL: https://docs.lammps.org/compute_bond.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/compute_smd_tlsph_strain_rate.html)

XIOC detected URL: https://docs.lammps.org/compute_smd_tlsph_strain_rate.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/compute_global_atom.html)

XIOC detected URL: https://docs.lammps.org/compute_global_atom.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_ave_chunk.html),

XIOC detected URL: https://docs.lammps.org/fix_ave_chunk.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_modify.html),

XIOC detected URL: https://docs.lammps.org/pair_modify.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/Commands_pair.html)

XIOC detected URL: https://docs.lammps.org/Commands_pair.html)

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URL

detected URL: https://docs.lammps.org/rerun.html),

XIOC detected URL: https://docs.lammps.org/rerun.html),

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URL

detected URL: https://www.plumed.org/doc.html).

XIOC detected URL: https://www.plumed.org/doc.html).

extracted_from_files

URL

detected URL: https://github.com/plumed/plumed2](https://github.com/plumed/plumed2)

XIOC detected URL: https://github.com/plumed/plumed2](https://github.com/plumed/plumed2)

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URL

detected URL: https://www.plumed.org/doc.html)

XIOC detected URL: https://www.plumed.org/doc.html)

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URL

detected URL: https://www.plumed.org/)

XIOC detected URL: https://www.plumed.org/)

extracted_from_files

URL

detected URL: https://docs.lammps.org/atc_mesh_read.html)

XIOC detected URL: https://docs.lammps.org/atc_mesh_read.html)

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URL

detected URL: https://docs.lammps.org/thermo_style.html).

XIOC detected URL: https://docs.lammps.org/thermo_style.html).

extracted_from_files

URL

detected URL: https://docs.lammps.org/temper_grem.html)

XIOC detected URL: https://docs.lammps.org/temper_grem.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_eam.html)

XIOC detected URL: https://docs.lammps.org/pair_eam.html)

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URL

detected URL: https://docs.lammps.org/Bogusz

XIOC detected URL: https://docs.lammps.org/Bogusz

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_colvars.html)

XIOC detected URL: https://docs.lammps.org/fix_colvars.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/bond_zero.html)

XIOC detected URL: https://docs.lammps.org/bond_zero.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/compute_xrd.html)

XIOC detected URL: https://docs.lammps.org/compute_xrd.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_saed_vtk.html),

XIOC detected URL: https://docs.lammps.org/fix_saed_vtk.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/displace_atoms.html)

XIOC detected URL: https://docs.lammps.org/displace_atoms.html)

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URL

detected URL: https://docs.lammps.org/temper_grem.html),

XIOC detected URL: https://docs.lammps.org/temper_grem.html),

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URL

detected URL: https://docs.lammps.org/fix_rigid.html))

XIOC detected URL: https://docs.lammps.org/fix_rigid.html))

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URL

detected URL: https://docs.lammps.org/restart.html);

XIOC detected URL: https://docs.lammps.org/restart.html);

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URL

detected URL: https://www.paraview.org/)

XIOC detected URL: https://www.paraview.org/)

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URL

detected URL: https://docs.lammps.org/fix_lb_viscous.html)

XIOC detected URL: https://docs.lammps.org/fix_lb_viscous.html)

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URL

detected URL: https://docs.lammps.org/bond_rheo_shell.html)

XIOC detected URL: https://docs.lammps.org/bond_rheo_shell.html)

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URL

detected URL: https://docs.lammps.org/bond_hybrid.html)

XIOC detected URL: https://docs.lammps.org/bond_hybrid.html)

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URL

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XIOC detected URL: https://docs.lammps.org/fix_rheo_thermal.html),

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URL

detected URL: https://docs.lammps.org/bond_rheo_shell.html).

XIOC detected URL: https://docs.lammps.org/bond_rheo_shell.html).

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_lb_momentum.html)

XIOC detected URL: https://docs.lammps.org/fix_lb_momentum.html)

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URL

detected URL: https://docs.lammps.org/fix_lb_viscous.html),

XIOC detected URL: https://docs.lammps.org/fix_lb_viscous.html),

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URL

detected URL: https://docs.lammps.org/pair_eam.html))

XIOC detected URL: https://docs.lammps.org/pair_eam.html))

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URL

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XIOC detected URL: https://docs.lammps.org/bond_rheo_shell.html),

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URL

detected URL: https://docs.lammps.org/pair_gran.html).

XIOC detected URL: https://docs.lammps.org/pair_gran.html).

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URL

detected URL: https://docs.lammps.org/pair_style.html)

XIOC detected URL: https://docs.lammps.org/pair_style.html)

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URL

detected URL: https://docs.lammps.org/pair_gran.html)

XIOC detected URL: https://docs.lammps.org/pair_gran.html)

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URL

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XIOC detected URL: https://docs.lammps.org/fix_adapt.html)

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URL

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XIOC detected URL: https://docs.lammps.org/pair_coeff.html),

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URL

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XIOC detected URL: https://docs.lammps.org/compute_gyration_shape.html)

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URL

detected URL: https://docs.lammps.org/compute_gyration_chunk.html)

XIOC detected URL: https://docs.lammps.org/compute_gyration_chunk.html)

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detected URL: https://docs.lammps.org/compute_gyration_chunk.html),

XIOC detected URL: https://docs.lammps.org/compute_gyration_chunk.html),

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URL

detected URL: https://docs.lammps.org/Sulc2

XIOC detected URL: https://docs.lammps.org/Sulc2

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URL

detected URL: https://docs.lammps.org/special_bonds.html)

XIOC detected URL: https://docs.lammps.org/special_bonds.html)

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URL

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XIOC detected URL: https://docs.lammps.org/fix_bond_react.html),

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URL

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XIOC detected URL: https://yade-dem.org/doc/)

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URL

detected URL: https://docs.lammps.org/fix_addtorque.html)

XIOC detected URL: https://docs.lammps.org/fix_addtorque.html)

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URL

detected URL: https://docs.lammps.org/neighbor.html)).

XIOC detected URL: https://docs.lammps.org/neighbor.html)).

extracted_from_files

URL

detected URL: https://docs.lammps.org/shell.html),

XIOC detected URL: https://docs.lammps.org/shell.html),

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URL

detected URL: https://docs.lammps.org/include.html),

XIOC detected URL: https://docs.lammps.org/include.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/timestep.html)

XIOC detected URL: https://docs.lammps.org/timestep.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/jump.html).)

XIOC detected URL: https://docs.lammps.org/jump.html).)

extracted_from_files

URL

detected URL: https://doi.org/10.1016/j.commatsci.2023.112534)

XIOC detected URL: https://doi.org/10.1016/j.commatsci.2023.112534)

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URL

detected URL: https://github.com/lafourcadep/SL-CSA)

XIOC detected URL: https://github.com/lafourcadep/SL-CSA)

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URL

detected URL: https://github.com/lafourcadep/SL-CSA).

XIOC detected URL: https://github.com/lafourcadep/SL-CSA).

extracted_from_files

URL

detected URL: https://docs.lammps.org/improper_style.html).

XIOC detected URL: https://docs.lammps.org/improper_style.html).

extracted_from_files

URL

detected URL: https://docs.lammps.org/bond_style.html).

XIOC detected URL: https://docs.lammps.org/bond_style.html).

extracted_from_files

URL

detected URL: https://docs.lammps.org/compute_hexorder_atom.html)

XIOC detected URL: https://docs.lammps.org/compute_hexorder_atom.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/compute_hexorder_atom.html).

XIOC detected URL: https://docs.lammps.org/compute_hexorder_atom.html).

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_gcmc.html),

XIOC detected URL: https://docs.lammps.org/fix_gcmc.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_shake.html).

XIOC detected URL: https://docs.lammps.org/fix_shake.html).

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_wall.html))

XIOC detected URL: https://docs.lammps.org/fix_wall.html))

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URL

detected URL: https://dasher.wustl.edu/tinker/

XIOC detected URL: https://dasher.wustl.edu/tinker/

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_bond_break.html).

XIOC detected URL: https://docs.lammps.org/fix_bond_break.html).

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_bond_swap.html),

XIOC detected URL: https://docs.lammps.org/fix_bond_swap.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/create_bonds.html)

XIOC detected URL: https://docs.lammps.org/create_bonds.html)

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URL

detected URL: https://docs.lammps.org/fix_npt_sphere.html),

XIOC detected URL: https://docs.lammps.org/fix_npt_sphere.html),

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URL

detected URL: https://docs.lammps.org/improper_amoeba.html)

XIOC detected URL: https://docs.lammps.org/improper_amoeba.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/angle_amoeba.html)

XIOC detected URL: https://docs.lammps.org/angle_amoeba.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/improper_amoeba.html),

XIOC detected URL: https://docs.lammps.org/improper_amoeba.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/dihedral_fourier.html),

XIOC detected URL: https://docs.lammps.org/dihedral_fourier.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/angle_amoeba.html),

XIOC detected URL: https://docs.lammps.org/angle_amoeba.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/bond_class2.html),

XIOC detected URL: https://docs.lammps.org/bond_class2.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/atom_style.html),

XIOC detected URL: https://docs.lammps.org/atom_style.html),

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URL

detected URL: https://docs.lammps.org/fix_amoeba_bitorsion.html)

XIOC detected URL: https://docs.lammps.org/fix_amoeba_bitorsion.html)

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URL

detected URL: https://docs.lammps.org/fix_amoeba_pitorsion.html)

XIOC detected URL: https://docs.lammps.org/fix_amoeba_pitorsion.html)

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URL

detected URL: https://docs.lammps.org/fix_deposit.html)

XIOC detected URL: https://docs.lammps.org/fix_deposit.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_move.html)),

XIOC detected URL: https://docs.lammps.org/fix_move.html)),

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URL

detected URL: https://docs.lammps.org/special_bonds.html),

XIOC detected URL: https://docs.lammps.org/special_bonds.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_amoeba_bitorsion.html),

XIOC detected URL: https://docs.lammps.org/fix_amoeba_bitorsion.html),

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URL

detected URL: https://docs.lammps.org/fix_amoeba_pitorsion.html),

XIOC detected URL: https://docs.lammps.org/fix_amoeba_pitorsion.html),

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URL

detected URL: https://docs.lammps.org/fix_temp_berendsen.html)).

XIOC detected URL: https://docs.lammps.org/fix_temp_berendsen.html)).

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_nh.html).

XIOC detected URL: https://docs.lammps.org/fix_nh.html).

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_nve.html),

XIOC detected URL: https://docs.lammps.org/fix_nve.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_gravity.html)

XIOC detected URL: https://docs.lammps.org/fix_gravity.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_gran.html))

XIOC detected URL: https://docs.lammps.org/pair_gran.html))

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_eff.html).

XIOC detected URL: https://docs.lammps.org/pair_eff.html).

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_modify.html).

XIOC detected URL: https://docs.lammps.org/fix_modify.html).

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_press_berendsen.html))

XIOC detected URL: https://docs.lammps.org/fix_press_berendsen.html))

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URL

detected URL: https://docs.lammps.org/bond_harmonic_shift.html),

XIOC detected URL: https://docs.lammps.org/bond_harmonic_shift.html),

extracted_from_files

URL

detected URL: https://math.lbl.gov/voro++/),

XIOC detected URL: https://math.lbl.gov/voro++/),

extracted_from_files

URL

detected URL: https://docs.lammps.org/thermo_modify.html)

XIOC detected URL: https://docs.lammps.org/thermo_modify.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/improper_none.html)

XIOC detected URL: https://docs.lammps.org/improper_none.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_bond_react.html)

XIOC detected URL: https://docs.lammps.org/fix_bond_react.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/molecule.html),

XIOC detected URL: https://docs.lammps.org/molecule.html),

extracted_from_files

URL

detected URL: https://www.gromacs.org)

XIOC detected URL: https://www.gromacs.org)

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URL

detected URL: https://docs.lammps.org/pair_atm.html)

XIOC detected URL: https://docs.lammps.org/pair_atm.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_aip_water_2dm.html)

XIOC detected URL: https://docs.lammps.org/pair_aip_water_2dm.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_agni.html)

XIOC detected URL: https://docs.lammps.org/pair_agni.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_adp.html)

XIOC detected URL: https://docs.lammps.org/pair_adp.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_none.html)

XIOC detected URL: https://docs.lammps.org/pair_none.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_cosine_squared.html)

XIOC detected URL: https://docs.lammps.org/pair_cosine_squared.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_comb.html)

XIOC detected URL: https://docs.lammps.org/pair_comb.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_bpm_spring.html)

XIOC detected URL: https://docs.lammps.org/pair_bpm_spring.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_cs.html)

XIOC detected URL: https://docs.lammps.org/pair_cs.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_bop.html)

XIOC detected URL: https://docs.lammps.org/pair_bop.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_body_nparticle.html)

XIOC detected URL: https://docs.lammps.org/pair_body_nparticle.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_beck.html)

XIOC detected URL: https://docs.lammps.org/pair_beck.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_dpd_ext.html)

XIOC detected URL: https://docs.lammps.org/pair_dpd_ext.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_dpd_coul_slater_long.html)

XIOC detected URL: https://docs.lammps.org/pair_dpd_coul_slater_long.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_dispersion_d3.html)

XIOC detected URL: https://docs.lammps.org/pair_dispersion_d3.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_coul_tt.html)

XIOC detected URL: https://docs.lammps.org/pair_coul_tt.html)

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URL

detected URL: https://docs.lammps.org/pair_ilp_graphene_hbn.html)

XIOC detected URL: https://docs.lammps.org/pair_ilp_graphene_hbn.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_coul_shield.html)

XIOC detected URL: https://docs.lammps.org/pair_coul_shield.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_coul_diel.html)

XIOC detected URL: https://docs.lammps.org/pair_coul_diel.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_exp6_rx.html)

XIOC detected URL: https://docs.lammps.org/pair_exp6_rx.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_eim.html)

XIOC detected URL: https://docs.lammps.org/pair_eim.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_edip.html)

XIOC detected URL: https://docs.lammps.org/pair_edip.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_drip.html)

XIOC detected URL: https://docs.lammps.org/pair_drip.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_e3b.html)

XIOC detected URL: https://docs.lammps.org/pair_e3b.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_dsmc.html)

XIOC detected URL: https://docs.lammps.org/pair_dsmc.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_kolmogorov_crespi_z.html)

XIOC detected URL: https://docs.lammps.org/pair_kolmogorov_crespi_z.html)

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URL

detected URL: https://docs.lammps.org/pair_kolmogorov_crespi_full.html)

XIOC detected URL: https://docs.lammps.org/pair_kolmogorov_crespi_full.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_ilp_tmd.html)

XIOC detected URL: https://docs.lammps.org/pair_ilp_tmd.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_hdnnp.html)

XIOC detected URL: https://docs.lammps.org/pair_hdnnp.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_hbond_dreiding.html)

XIOC detected URL: https://docs.lammps.org/pair_hbond_dreiding.html)

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URL

detected URL: https://docs.lammps.org/pair_gw.html)

XIOC detected URL: https://docs.lammps.org/pair_gw.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_extep.html)

XIOC detected URL: https://docs.lammps.org/pair_extep.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_thole.html)

XIOC detected URL: https://docs.lammps.org/pair_thole.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_lj_cut_sphere.html)

XIOC detected URL: https://docs.lammps.org/pair_lj_cut_sphere.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_charmm.html)

XIOC detected URL: https://docs.lammps.org/pair_charmm.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_lepton.html)

XIOC detected URL: https://docs.lammps.org/pair_lepton.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_lcbop.html)

XIOC detected URL: https://docs.lammps.org/pair_lcbop.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_local_density.html)

XIOC detected URL: https://docs.lammps.org/pair_local_density.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_lj_switch3_coulgauss_long.html)

XIOC detected URL: https://docs.lammps.org/pair_lj_switch3_coulgauss_long.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_lj_smooth.html)

XIOC detected URL: https://docs.lammps.org/pair_lj_smooth.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_spica.html)

XIOC detected URL: https://docs.lammps.org/pair_spica.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_lj_relres.html)

XIOC detected URL: https://docs.lammps.org/pair_lj_relres.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_lj_long.html)

XIOC detected URL: https://docs.lammps.org/pair_lj_long.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_lj_expand_sphere.html)

XIOC detected URL: https://docs.lammps.org/pair_lj_expand_sphere.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_nb3b.html)

XIOC detected URL: https://docs.lammps.org/pair_nb3b.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_multi_lucy_rx.html)

XIOC detected URL: https://docs.lammps.org/pair_multi_lucy_rx.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_momb.html)

XIOC detected URL: https://docs.lammps.org/pair_momb.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_mgpt.html)

XIOC detected URL: https://docs.lammps.org/pair_mgpt.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_meam_sw_spline.html)

XIOC detected URL: https://docs.lammps.org/pair_meam_sw_spline.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_meam_spline.html)

XIOC detected URL: https://docs.lammps.org/pair_meam_spline.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_rann.html)

XIOC detected URL: https://docs.lammps.org/pair_rann.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_python.html)

XIOC detected URL: https://docs.lammps.org/pair_python.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_polymorphic.html)

XIOC detected URL: https://docs.lammps.org/pair_polymorphic.html)

extracted_from_files

URL

detected URL: https://openkim.org/properties).

XIOC detected URL: https://openkim.org/properties).

extracted_from_files

URL

detected URL: https://github.com/ICAMS/python-ace).

XIOC detected URL: https://github.com/ICAMS/python-ace).

extracted_from_files

URL

detected URL: https://docs.lammps.org/comm_modify.html)

XIOC detected URL: https://docs.lammps.org/comm_modify.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/compute_mliap.html)

XIOC detected URL: https://docs.lammps.org/compute_mliap.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/atc_control_momentum.html)

XIOC detected URL: https://docs.lammps.org/atc_control_momentum.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/compute_pace.html).

XIOC detected URL: https://docs.lammps.org/compute_pace.html).

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_snap.html).

XIOC detected URL: https://docs.lammps.org/pair_snap.html).

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_pace.html).

XIOC detected URL: https://docs.lammps.org/pair_pace.html).

extracted_from_files

URL

detected URL: https://github.com/qzhu2017/PyXtal_FF)

XIOC detected URL: https://github.com/qzhu2017/PyXtal_FF)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_pace.html),

XIOC detected URL: https://docs.lammps.org/pair_pace.html),

extracted_from_files

URL

detected URL: https://github.com/FitSNAP/FitSNAP)

XIOC detected URL: https://github.com/FitSNAP/FitSNAP)

extracted_from_files

URL

detected URL: https://docs.lammps.org/improper_zero.html)

XIOC detected URL: https://docs.lammps.org/improper_zero.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_smd_ulsph.html)

XIOC detected URL: https://docs.lammps.org/pair_smd_ulsph.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/dielectric.html),

XIOC detected URL: https://docs.lammps.org/dielectric.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/ideal-Monoghan

XIOC detected URL: https://docs.lammps.org/ideal-Monoghan

extracted_from_files

URL

detected URL: https://openkim.org)

XIOC detected URL: https://openkim.org)

extracted_from_files

URL

detected URL: https://openkim.org/doc/overview/kim-features/

XIOC detected URL: https://openkim.org/doc/overview/kim-features/

extracted_from_files

URL

detected URL: https://openkim.org/kim-api/))

XIOC detected URL: https://openkim.org/kim-api/))

extracted_from_files

URL

detected URL: https://openkim.org/projects-using-kim/)).

XIOC detected URL: https://openkim.org/projects-using-kim/)).

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_vashishta.html)

XIOC detected URL: https://docs.lammps.org/pair_vashishta.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/create_box.html)).

XIOC detected URL: https://docs.lammps.org/create_box.html)).

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_ylz.html)

XIOC detected URL: https://docs.lammps.org/pair_ylz.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_oxrna2.html)

XIOC detected URL: https://docs.lammps.org/pair_oxrna2.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_oxdna2.html)

XIOC detected URL: https://docs.lammps.org/pair_oxdna2.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_oxdna.html)

XIOC detected URL: https://docs.lammps.org/pair_oxdna.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_smd_tlsph.html)

XIOC detected URL: https://docs.lammps.org/pair_smd_tlsph.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_smd_hertz.html)

XIOC detected URL: https://docs.lammps.org/pair_smd_hertz.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_smatb.html)

XIOC detected URL: https://docs.lammps.org/pair_smatb.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_sdpd_taitwater_isothermal.html)

XIOC detected URL: https://docs.lammps.org/pair_sdpd_taitwater_isothermal.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_saip_metal.html)

XIOC detected URL: https://docs.lammps.org/pair_saip_metal.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_rheo_solid.html)

XIOC detected URL: https://docs.lammps.org/pair_rheo_solid.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_rebomos.html)

XIOC detected URL: https://docs.lammps.org/pair_rebomos.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_sph_rhosum.html)

XIOC detected URL: https://docs.lammps.org/pair_sph_rhosum.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_yukawa_colloid.html)

XIOC detected URL: https://docs.lammps.org/pair_yukawa_colloid.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_sph_idealgas.html)

XIOC detected URL: https://docs.lammps.org/pair_sph_idealgas.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_sph_lj.html)

XIOC detected URL: https://docs.lammps.org/pair_sph_lj.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_spin_dipole.html)

XIOC detected URL: https://docs.lammps.org/pair_spin_dipole.html)

extracted_from_files

URL

detected URL: https://openkim.org/browse/models/by-species).

XIOC detected URL: https://openkim.org/browse/models/by-species).

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_sph_heatconduction.html)

XIOC detected URL: https://docs.lammps.org/pair_sph_heatconduction.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_zbl.html)

XIOC detected URL: https://docs.lammps.org/pair_zbl.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/read_data.html),

XIOC detected URL: https://docs.lammps.org/read_data.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_smtbq.html)

XIOC detected URL: https://docs.lammps.org/pair_smtbq.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_tersoff_mod.html)

XIOC detected URL: https://docs.lammps.org/pair_tersoff_mod.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_uf3.html)

XIOC detected URL: https://docs.lammps.org/pair_uf3.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_sph_taitwater_morris.html)

XIOC detected URL: https://docs.lammps.org/pair_sph_taitwater_morris.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/compute_smd_rho.html)

XIOC detected URL: https://docs.lammps.org/compute_smd_rho.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/neigh_modify.html),

XIOC detected URL: https://docs.lammps.org/neigh_modify.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_dt_reset.html),

XIOC detected URL: https://docs.lammps.org/fix_dt_reset.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/compute_fep.html))

XIOC detected URL: https://docs.lammps.org/compute_fep.html))

extracted_from_files

detected IP: e::

XIOC detected IP: e::

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_adapt.html),

XIOC detected URL: https://docs.lammps.org/fix_adapt.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_adapt_fep.html),

XIOC detected URL: https://docs.lammps.org/fix_adapt_fep.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/compute_fep.html)

XIOC detected URL: https://docs.lammps.org/compute_fep.html)

extracted_from_files

URL

detected URL: https://openkim.org/properties/show/2016-05-11/[email protected]/atomic-mass)

XIOC detected URL: https://openkim.org/properties/show/2016-05-11/[email protected]/atomic-mass)

extracted_from_files

URL

detected URL: https://doi.org/10.25950/FF8F563A](https://doi.org/10.25950/FF8F563A)

XIOC detected URL: https://doi.org/10.25950/FF8F563A](https://doi.org/10.25950/FF8F563A)

extracted_from_files

URL

detected URL: https://openkim.org/kim-api/)

XIOC detected URL: https://openkim.org/kim-api/)

extracted_from_files

URL

detected URL: https://doi.org/10.1007/s11837-011-0102-6](https://doi.org/10.1007/s11837-011-0102-6)

XIOC detected URL: https://doi.org/10.1007/s11837-011-0102-6](https://doi.org/10.1007/s11837-011-0102-6)

extracted_from_files

URL

detected URL: https://docs.lammps.org/atom_modify.html),

XIOC detected URL: https://docs.lammps.org/atom_modify.html),

extracted_from_files

URL

detected URL: https://openkim.org/doc/schema/properties-framework)_;

XIOC detected URL: https://openkim.org/doc/schema/properties-framework)_;

extracted_from_files

URL

detected URL: https://www.gnu.org/software/units/).

XIOC detected URL: https://www.gnu.org/software/units/).

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_class2.html)).

XIOC detected URL: https://docs.lammps.org/pair_class2.html)).

extracted_from_files

URL

detected URL: https://openkim.org/properties/show/2014-04-15/[email protected]/cohesive-energy-relation-cubic-crystal)

XIOC detected URL: https://openkim.org/properties/show/2014-04-15/[email protected]/cohesive-energy-relation-cubic-crystal)

extracted_from_files

URL

detected URL: https://openkim.org/kim-api](https://openkim.org/kim-api)

XIOC detected URL: https://openkim.org/kim-api](https://openkim.org/kim-api)

extracted_from_files

URL

detected URL: https://openkim.org/id/SW_StillingerWeber_1985_Si__MO_405512056662_005),

XIOC detected URL: https://openkim.org/id/SW_StillingerWeber_1985_Si__MO_405512056662_005),

extracted_from_files

URL

detected URL: https://openkim.org/id/SW_ZhouWardMartin_2013_CdTeZnSeHgS__MO_503261197030_002)

XIOC detected URL: https://openkim.org/id/SW_ZhouWardMartin_2013_CdTeZnSeHgS__MO_503261197030_002)

extracted_from_files

URL

detected URL: https://openkim.org/doc/schema/properties-framework/)_

XIOC detected URL: https://openkim.org/doc/schema/properties-framework/)_

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_viscosity.html),

XIOC detected URL: https://docs.lammps.org/fix_viscosity.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_table_rx.html)

XIOC detected URL: https://docs.lammps.org/pair_table_rx.html)

extracted_from_files

URL

detected URL: https://openkim.org/id/SW_StillingerWeber_1985_Si__MO_405512056662_005](https://openkim.org/id/SW_StillingerWeber_1985_Si__MO_405512056662_005)

XIOC detected URL: https://openkim.org/id/SW_StillingerWeber_1985_Si__MO_405512056662_005](https://openkim.org/id/SW_StillingerWeber_1985_Si__MO_405512056662_005)

extracted_from_files

URL

detected URL: https://openkim.org/id/extended_KIM_ID

XIOC detected URL: https://openkim.org/id/extended_KIM_ID

extracted_from_files

URL

detected URL: https://openkim.org/doc/schema/kim-ids/)

XIOC detected URL: https://openkim.org/doc/schema/kim-ids/)

extracted_from_files

URL

detected URL: https://openkim.org/doc/schema/kim-ids/).

XIOC detected URL: https://openkim.org/doc/schema/kim-ids/).

extracted_from_files

URL

detected URL: https://openkim.org/doc/repository/adding-content/).)

XIOC detected URL: https://openkim.org/doc/repository/adding-content/).)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_class2.html).

XIOC detected URL: https://docs.lammps.org/pair_class2.html).

extracted_from_files

URL

detected URL: https://docs.lammps.org/compute_temp.html)

XIOC detected URL: https://docs.lammps.org/compute_temp.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_drude_transform.html),

XIOC detected URL: https://docs.lammps.org/fix_drude_transform.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_thole.html),

XIOC detected URL: https://docs.lammps.org/pair_thole.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_viscous.html)

XIOC detected URL: https://docs.lammps.org/fix_viscous.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/neigh_modify.html)),

XIOC detected URL: https://docs.lammps.org/neigh_modify.html)),

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_cs.html),

XIOC detected URL: https://docs.lammps.org/pair_cs.html),

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_enforce2d.html)

XIOC detected URL: https://docs.lammps.org/fix_enforce2d.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_indent.html)

XIOC detected URL: https://docs.lammps.org/fix_indent.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_lineforce.html)

XIOC detected URL: https://docs.lammps.org/fix_lineforce.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_setforce.html)

XIOC detected URL: https://docs.lammps.org/fix_setforce.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_charmm.html)),

XIOC detected URL: https://docs.lammps.org/pair_charmm.html)),

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_gromacs.html)).

XIOC detected URL: https://docs.lammps.org/pair_gromacs.html)).

extracted_from_files

URL

detected URL: https://docs.lammps.org/pair_soft.html))

XIOC detected URL: https://docs.lammps.org/pair_soft.html))

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_addforce.html)

XIOC detected URL: https://docs.lammps.org/fix_addforce.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/compute_temp_chunk.html)

XIOC detected URL: https://docs.lammps.org/compute_temp_chunk.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_nve_limit.html).

XIOC detected URL: https://docs.lammps.org/fix_nve_limit.html).

extracted_from_files

URL

detected URL: https://docs.lammps.org/fix_nh_uef.html)

XIOC detected URL: https://docs.lammps.org/fix_nh_uef.html)

extracted_from_files

URL

detected URL: https://docs.lammps.org/angle_none.html)

XIOC detected URL: https://docs.lammps.org/angle_none.html)

extracted_from_files

Security Analysis Summary

Security Analysis Overview

LAMMPS Script Syntax is a Visual Studio Code Marketplace extension published by thangckt. Version 1.0.1 has been analyzed by the Risky Plugins security platform, receiving a risk score of 64.92/100 (MEDIUM risk) based on 3871 security findings.

Risk Assessment

This extension presents high security risk. Significant concerns were identified during analysis. It is not recommended for use in sensitive or production environments without thorough review.

Findings Breakdown

Medium: 3855 finding(s)
Low: 16 finding(s)

What Was Analyzed

The security assessment covers multiple analysis categories:

Malware Detection: YARA rule matching against 2,400+ malware signatures
Secret Detection: Scanning for exposed API keys, tokens, and credentials
Static Analysis: Code-level security analysis for common vulnerability patterns
Network Analysis: Detection of suspicious network communications and endpoints
Obfuscation Detection: Identification of code obfuscation techniques

Developer Information

LAMMPS Script Syntax is published by thangckt on the Visual Studio Code Marketplace marketplace. The extension has approximately 149 users.

Recommendation

This extension is not recommended for installation without thorough manual review. Consider alternatives with lower risk scores, or contact the developer to address the identified security concerns.

Source Code Viewer

Source Code Not Available

Source code is not available for this version of the extension.

Frequently Asked Questions

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Risk Assessment

Severity Breakdown

Finding Categories

About This Extension

Detailed Findings

NET-FETCH-extension/node_modules/vscode-oniguruma/release/main.js-1

Indicators of Compromise

All Indicators · 761

Security Analysis Summary

Security Analysis Overview

Risk Assessment

Findings Breakdown

What Was Analyzed

Developer Information

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