Is "LAMMPS Script Syntax" on OpenVSX Registry Safe to Install?
VerifiedKeyword/Syntax highlighting extension for Molecular Dynamics Scripts LAMMPS
Risk Assessment
Analyzed3871 security findings detected across all analyzers
Open VSX extension analyzed via package manifest and static code analysis
Severity Breakdown
Finding Categories
About This Extension
Detailed Findings
1 totalIndicators of Compromise
Network indicators, suspicious strings, and potential IoCs extracted during analysis
All Indicators · 744
detected URL: https://docs.lammps.org/atc_atom_element_map.html) XIOC detected URL: https://docs.lammps.org/atc_atom_element_map.html)
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detected URL: https://docs.lammps.org/improper_none.html) XIOC detected URL: https://docs.lammps.org/improper_none.html)
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detected URL: https://docs.lammps.org/fix_bond_react.html) XIOC detected URL: https://docs.lammps.org/fix_bond_react.html)
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detected URL: https://docs.lammps.org/molecule.html), XIOC detected URL: https://docs.lammps.org/molecule.html),
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detected URL: https://docs.lammps.org/write_data.html), XIOC detected URL: https://docs.lammps.org/write_data.html),
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detected URL: https://docs.lammps.org/pair_coeff.html) XIOC detected URL: https://docs.lammps.org/pair_coeff.html)
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detected URL: https://docs.lammps.org/pair_beck.html) XIOC detected URL: https://docs.lammps.org/pair_beck.html)
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detected URL: https://docs.lammps.org/pair_atm.html) XIOC detected URL: https://docs.lammps.org/pair_atm.html)
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detected URL: https://docs.lammps.org/pair_aip_water_2dm.html) XIOC detected URL: https://docs.lammps.org/pair_aip_water_2dm.html)
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detected URL: https://docs.lammps.org/pair_agni.html) XIOC detected URL: https://docs.lammps.org/pair_agni.html)
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detected URL: https://docs.lammps.org/pair_adp.html) XIOC detected URL: https://docs.lammps.org/pair_adp.html)
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detected URL: https://docs.lammps.org/pair_none.html) XIOC detected URL: https://docs.lammps.org/pair_none.html)
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detected URL: https://docs.lammps.org/Commands_pair.html) XIOC detected URL: https://docs.lammps.org/Commands_pair.html)
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detected URL: https://docs.lammps.org/pair_coul_diel.html) XIOC detected URL: https://docs.lammps.org/pair_coul_diel.html)
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detected URL: https://docs.lammps.org/pair_cosine_squared.html) XIOC detected URL: https://docs.lammps.org/pair_cosine_squared.html)
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detected URL: https://docs.lammps.org/pair_comb.html) XIOC detected URL: https://docs.lammps.org/pair_comb.html)
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detected URL: https://docs.lammps.org/pair_bpm_spring.html) XIOC detected URL: https://docs.lammps.org/pair_bpm_spring.html)
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detected URL: https://docs.lammps.org/pair_cs.html) XIOC detected URL: https://docs.lammps.org/pair_cs.html)
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detected URL: https://docs.lammps.org/pair_bop.html) XIOC detected URL: https://docs.lammps.org/pair_bop.html)
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detected URL: https://docs.lammps.org/pair_body_nparticle.html) XIOC detected URL: https://docs.lammps.org/pair_body_nparticle.html)
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detected URL: https://docs.lammps.org/pair_dpd_fdt.html) XIOC detected URL: https://docs.lammps.org/pair_dpd_fdt.html)
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detected URL: https://docs.lammps.org/pair_dpd_ext.html) XIOC detected URL: https://docs.lammps.org/pair_dpd_ext.html)
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detected URL: https://docs.lammps.org/pair_dpd_coul_slater_long.html) XIOC detected URL: https://docs.lammps.org/pair_dpd_coul_slater_long.html)
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detected URL: https://docs.lammps.org/pair_dispersion_d3.html) XIOC detected URL: https://docs.lammps.org/pair_dispersion_d3.html)
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detected URL: https://docs.lammps.org/pair_coul_tt.html) XIOC detected URL: https://docs.lammps.org/pair_coul_tt.html)
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detected URL: https://docs.lammps.org/pair_ilp_graphene_hbn.html) XIOC detected URL: https://docs.lammps.org/pair_ilp_graphene_hbn.html)
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detected URL: https://docs.lammps.org/pair_coul_shield.html) XIOC detected URL: https://docs.lammps.org/pair_coul_shield.html)
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detected URL: https://docs.lammps.org/pair_extep.html) XIOC detected URL: https://docs.lammps.org/pair_extep.html)
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detected URL: https://docs.lammps.org/pair_exp6_rx.html) XIOC detected URL: https://docs.lammps.org/pair_exp6_rx.html)
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detected URL: https://docs.lammps.org/pair_eim.html) XIOC detected URL: https://docs.lammps.org/pair_eim.html)
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detected URL: https://docs.lammps.org/pair_edip.html) XIOC detected URL: https://docs.lammps.org/pair_edip.html)
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detected URL: https://docs.lammps.org/pair_drip.html) XIOC detected URL: https://docs.lammps.org/pair_drip.html)
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detected URL: https://docs.lammps.org/pair_e3b.html) XIOC detected URL: https://docs.lammps.org/pair_e3b.html)
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detected URL: https://docs.lammps.org/pair_dsmc.html) XIOC detected URL: https://docs.lammps.org/pair_dsmc.html)
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detected URL: https://docs.lammps.org/pair_lcbop.html) XIOC detected URL: https://docs.lammps.org/pair_lcbop.html)
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detected URL: https://docs.lammps.org/pair_kolmogorov_crespi_z.html) XIOC detected URL: https://docs.lammps.org/pair_kolmogorov_crespi_z.html)
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detected URL: https://docs.lammps.org/pair_kolmogorov_crespi_full.html) XIOC detected URL: https://docs.lammps.org/pair_kolmogorov_crespi_full.html)
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detected URL: https://docs.lammps.org/pair_ilp_tmd.html) XIOC detected URL: https://docs.lammps.org/pair_ilp_tmd.html)
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detected URL: https://docs.lammps.org/pair_hdnnp.html) XIOC detected URL: https://docs.lammps.org/pair_hdnnp.html)
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detected URL: https://docs.lammps.org/pair_hbond_dreiding.html) XIOC detected URL: https://docs.lammps.org/pair_hbond_dreiding.html)
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detected URL: https://docs.lammps.org/pair_gw.html) XIOC detected URL: https://docs.lammps.org/pair_gw.html)
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detected URL: https://docs.lammps.org/pair_lj_expand_sphere.html) XIOC detected URL: https://docs.lammps.org/pair_lj_expand_sphere.html)
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detected URL: https://docs.lammps.org/pair_thole.html) XIOC detected URL: https://docs.lammps.org/pair_thole.html)
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detected URL: https://docs.lammps.org/pair_lj_cut_sphere.html) XIOC detected URL: https://docs.lammps.org/pair_lj_cut_sphere.html)
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detected URL: https://docs.lammps.org/pair_charmm.html) XIOC detected URL: https://docs.lammps.org/pair_charmm.html)
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detected URL: https://docs.lammps.org/pair_line_lj.html) XIOC detected URL: https://docs.lammps.org/pair_line_lj.html)
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detected URL: https://docs.lammps.org/pair_lepton.html) XIOC detected URL: https://docs.lammps.org/pair_lepton.html)
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detected URL: https://docs.lammps.org/pair_lebedeva_z.html) XIOC detected URL: https://docs.lammps.org/pair_lebedeva_z.html)
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detected URL: https://docs.lammps.org/pair_lubricateU.html) XIOC detected URL: https://docs.lammps.org/pair_lubricateU.html)
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detected URL: https://docs.lammps.org/pair_local_density.html) XIOC detected URL: https://docs.lammps.org/pair_local_density.html)
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detected URL: https://docs.lammps.org/pair_lj_switch3_coulgauss_long.html) XIOC detected URL: https://docs.lammps.org/pair_lj_switch3_coulgauss_long.html)
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detected URL: https://docs.lammps.org/pair_lj_smooth.html) XIOC detected URL: https://docs.lammps.org/pair_lj_smooth.html)
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detected URL: https://docs.lammps.org/pair_spica.html) XIOC detected URL: https://docs.lammps.org/pair_spica.html)
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detected URL: https://docs.lammps.org/pair_lj_relres.html) XIOC detected URL: https://docs.lammps.org/pair_lj_relres.html)
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detected URL: https://docs.lammps.org/pair_lj_long.html) XIOC detected URL: https://docs.lammps.org/pair_lj_long.html)
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detected URL: https://docs.lammps.org/pair_oxdna.html) XIOC detected URL: https://docs.lammps.org/pair_oxdna.html)
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detected URL: https://docs.lammps.org/pair_nb3b.html) XIOC detected URL: https://docs.lammps.org/pair_nb3b.html)
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detected URL: https://docs.lammps.org/pair_multi_lucy_rx.html) XIOC detected URL: https://docs.lammps.org/pair_multi_lucy_rx.html)
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detected URL: https://docs.lammps.org/pair_momb.html) XIOC detected URL: https://docs.lammps.org/pair_momb.html)
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detected URL: https://docs.lammps.org/pair_mgpt.html) XIOC detected URL: https://docs.lammps.org/pair_mgpt.html)
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detected URL: https://docs.lammps.org/pair_meam_sw_spline.html) XIOC detected URL: https://docs.lammps.org/pair_meam_sw_spline.html)
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detected URL: https://docs.lammps.org/pair_meam_spline.html) XIOC detected URL: https://docs.lammps.org/pair_meam_spline.html)
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detected URL: https://docs.lammps.org/pair_rebomos.html) XIOC detected URL: https://docs.lammps.org/pair_rebomos.html)
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detected URL: https://docs.lammps.org/pair_rann.html) XIOC detected URL: https://docs.lammps.org/pair_rann.html)
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detected URL: https://docs.lammps.org/pair_python.html) XIOC detected URL: https://docs.lammps.org/pair_python.html)
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detected URL: https://docs.lammps.org/pair_polymorphic.html) XIOC detected URL: https://docs.lammps.org/pair_polymorphic.html)
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detected URL: https://docs.lammps.org/pair_peri.html) XIOC detected URL: https://docs.lammps.org/pair_peri.html)
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detected URL: https://docs.lammps.org/pair_oxrna2.html) XIOC detected URL: https://docs.lammps.org/pair_oxrna2.html)
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detected URL: https://docs.lammps.org/pair_oxdna2.html) XIOC detected URL: https://docs.lammps.org/pair_oxdna2.html)
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detected URL: https://docs.lammps.org/pair_smd_ulsph.html) XIOC detected URL: https://docs.lammps.org/pair_smd_ulsph.html)
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detected URL: https://docs.lammps.org/pair_smd_tlsph.html) XIOC detected URL: https://docs.lammps.org/pair_smd_tlsph.html)
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detected URL: https://docs.lammps.org/pair_smd_hertz.html) XIOC detected URL: https://docs.lammps.org/pair_smd_hertz.html)
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detected URL: https://docs.lammps.org/pair_smatb.html) XIOC detected URL: https://docs.lammps.org/pair_smatb.html)
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detected URL: https://docs.lammps.org/pair_sdpd_taitwater_isothermal.html) XIOC detected URL: https://docs.lammps.org/pair_sdpd_taitwater_isothermal.html)
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detected URL: https://docs.lammps.org/pair_saip_metal.html) XIOC detected URL: https://docs.lammps.org/pair_saip_metal.html)
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detected URL: https://docs.lammps.org/pair_rheo_solid.html) XIOC detected URL: https://docs.lammps.org/pair_rheo_solid.html)
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detected URL: https://docs.lammps.org/pair_sph_taitwater_morris.html) XIOC detected URL: https://docs.lammps.org/pair_sph_taitwater_morris.html)
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detected URL: https://docs.lammps.org/pair_sph_taitwater.html) XIOC detected URL: https://docs.lammps.org/pair_sph_taitwater.html)
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detected URL: https://docs.lammps.org/pair_sph_rhosum.html) XIOC detected URL: https://docs.lammps.org/pair_sph_rhosum.html)
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detected URL: https://docs.lammps.org/pair_sph_lj.html) XIOC detected URL: https://docs.lammps.org/pair_sph_lj.html)
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detected URL: https://docs.lammps.org/pair_sph_idealgas.html) XIOC detected URL: https://docs.lammps.org/pair_sph_idealgas.html)
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detected URL: https://docs.lammps.org/pair_sph_heatconduction.html) XIOC detected URL: https://docs.lammps.org/pair_sph_heatconduction.html)
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detected URL: https://docs.lammps.org/pair_smtbq.html) XIOC detected URL: https://docs.lammps.org/pair_smtbq.html)
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detected URL: https://docs.lammps.org/pair_vashishta.html) XIOC detected URL: https://docs.lammps.org/pair_vashishta.html)
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detected URL: https://docs.lammps.org/pair_uf3.html) XIOC detected URL: https://docs.lammps.org/pair_uf3.html)
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detected URL: https://docs.lammps.org/pair_tri_lj.html) XIOC detected URL: https://docs.lammps.org/pair_tri_lj.html)
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detected URL: https://docs.lammps.org/pair_threebody_table.html) XIOC detected URL: https://docs.lammps.org/pair_threebody_table.html)
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detected URL: https://docs.lammps.org/pair_tersoff_mod.html) XIOC detected URL: https://docs.lammps.org/pair_tersoff_mod.html)
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detected URL: https://docs.lammps.org/pair_table_rx.html) XIOC detected URL: https://docs.lammps.org/pair_table_rx.html)
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detected URL: https://docs.lammps.org/pair_spin_dipole.html) XIOC detected URL: https://docs.lammps.org/pair_spin_dipole.html)
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detected URL: https://docs.lammps.org/dielectric.html), XIOC detected URL: https://docs.lammps.org/dielectric.html),
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detected URL: https://docs.lammps.org/kspace_style.html), XIOC detected URL: https://docs.lammps.org/kspace_style.html),
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detected URL: https://docs.lammps.org/pair_modify.html), XIOC detected URL: https://docs.lammps.org/pair_modify.html),
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detected URL: https://docs.lammps.org/read_data.html), XIOC detected URL: https://docs.lammps.org/read_data.html),
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detected URL: https://docs.lammps.org/pair_zbl.html) XIOC detected URL: https://docs.lammps.org/pair_zbl.html)
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detected URL: https://docs.lammps.org/pair_yukawa_colloid.html) XIOC detected URL: https://docs.lammps.org/pair_yukawa_colloid.html)
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detected URL: https://docs.lammps.org/pair_ylz.html) XIOC detected URL: https://docs.lammps.org/pair_ylz.html)
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detected URL: https://openkim.org/doc/repository/adding-content/).) XIOC detected URL: https://openkim.org/doc/repository/adding-content/).)
extracted_from_files
detected URL: https://openkim.org/projects-using-kim/)). XIOC detected URL: https://openkim.org/projects-using-kim/)).
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detected URL: https://openkim.org/kim-api/)) XIOC detected URL: https://openkim.org/kim-api/))
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detected URL: https://openkim.org/doc/overview/kim-features/ XIOC detected URL: https://openkim.org/doc/overview/kim-features/
extracted_from_files
detected URL: https://openkim.org) XIOC detected URL: https://openkim.org)
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detected URL: https://docs.lammps.org/ideal-Monoghan XIOC detected URL: https://docs.lammps.org/ideal-Monoghan
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detected URL: https://docs.lammps.org/pair_write.html) XIOC detected URL: https://docs.lammps.org/pair_write.html)
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detected URL: https://openkim.org/doc/usage/obtaining-models) XIOC detected URL: https://openkim.org/doc/usage/obtaining-models)
extracted_from_files
detected URL: https://openkim.org/browse/models/by-species). XIOC detected URL: https://openkim.org/browse/models/by-species).
extracted_from_files
detected URL: https://openkim.org/id/SW_StillingerWeber_1985_Si__MO_405512056662_005](https://openkim.org/id/SW_StillingerWeber_1985_Si__MO_405512056662_005) XIOC detected URL: https://openkim.org/id/SW_StillingerWeber_1985_Si__MO_405512056662_005](https://openkim.org/id/SW_StillingerWeber_1985_Si__MO_405512056662_005)
extracted_from_files
detected URL: https://openkim.org/id/extended_KIM_ID XIOC detected URL: https://openkim.org/id/extended_KIM_ID
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detected URL: https://openkim.org/doc/schema/kim-ids/) XIOC detected URL: https://openkim.org/doc/schema/kim-ids/)
extracted_from_files
detected URL: https://openkim.org/doc/schema/kim-ids/). XIOC detected URL: https://openkim.org/doc/schema/kim-ids/).
extracted_from_files
detected URL: https://openkim.org/doc/usage/kim-query](https://openkim.org/doc/usage/kim-query). XIOC detected URL: https://openkim.org/doc/usage/kim-query](https://openkim.org/doc/usage/kim-query).
extracted_from_files
detected URL: https://docs.lammps.org/variable.html) XIOC detected URL: https://docs.lammps.org/variable.html)
extracted_from_files
detected URL: https://openkim.org). XIOC detected URL: https://openkim.org).
extracted_from_files
detected URL: https://docs.lammps.org/create_box.html)). XIOC detected URL: https://docs.lammps.org/create_box.html)).
extracted_from_files
detected URL: https://openkim.org/doc/evaluation/kim-tests/).) XIOC detected URL: https://openkim.org/doc/evaluation/kim-tests/).)
extracted_from_files
detected URL: https://docs.lammps.org/atom_style.html)). XIOC detected URL: https://docs.lammps.org/atom_style.html)).
extracted_from_files
detected URL: https://openkim.org/doc/schema/kim-ids/), XIOC detected URL: https://openkim.org/doc/schema/kim-ids/),
extracted_from_files
detected URL: https://openkim.org/id/SW_StillingerWeber_1985_Si__MO_405512056662_005), XIOC detected URL: https://openkim.org/id/SW_StillingerWeber_1985_Si__MO_405512056662_005),
extracted_from_files
detected URL: https://openkim.org/id/SW_ZhouWardMartin_2013_CdTeZnSeHgS__MO_503261197030_002) XIOC detected URL: https://openkim.org/id/SW_ZhouWardMartin_2013_CdTeZnSeHgS__MO_503261197030_002)
extracted_from_files
detected URL: https://kim-api.readthedocs.io/en/devel/features.html) XIOC detected URL: https://kim-api.readthedocs.io/en/devel/features.html)
extracted_from_files
detected URL: https://openkim.org/doc/usage/kim-query) XIOC detected URL: https://openkim.org/doc/usage/kim-query)
extracted_from_files
detected URL: https://openkim.org/doc/evaluation/kim-tests/)) XIOC detected URL: https://openkim.org/doc/evaluation/kim-tests/))
extracted_from_files
detected URL: https://openkim.org/doc/schema/properties-framework)_; XIOC detected URL: https://openkim.org/doc/schema/properties-framework)_;
extracted_from_files
detected URL: https://openkim.org/doc/schema/properties-framework)_) XIOC detected URL: https://openkim.org/doc/schema/properties-framework)_)
extracted_from_files
detected URL: https://openkim.org/properties), XIOC detected URL: https://openkim.org/properties),
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detected URL: https://openkim.org/properties). XIOC detected URL: https://openkim.org/properties).
extracted_from_files
detected URL: https://openkim.org/doc/schema/properties-framework/)_ XIOC detected URL: https://openkim.org/doc/schema/properties-framework/)_
extracted_from_files
detected URL: https://doi.org/10.25950/FF8F563A](https://doi.org/10.25950/FF8F563A) XIOC detected URL: https://doi.org/10.25950/FF8F563A](https://doi.org/10.25950/FF8F563A)
extracted_from_files
detected URL: https://openkim.org/kim-api](https://openkim.org/kim-api) XIOC detected URL: https://openkim.org/kim-api](https://openkim.org/kim-api)
extracted_from_files
detected URL: https://doi.org/10.1007/s11837-011-0102-6](https://doi.org/10.1007/s11837-011-0102-6) XIOC detected URL: https://doi.org/10.1007/s11837-011-0102-6](https://doi.org/10.1007/s11837-011-0102-6)
extracted_from_files
detected URL: https://openkim.org/properties/show/2014-04-15/[email protected]/cohesive-energy-relation-cubic-crystal) XIOC detected URL: https://openkim.org/properties/show/2014-04-15/[email protected]/cohesive-energy-relation-cubic-crystal)
extracted_from_files
detected URL: https://openkim.org/properties/show/2016-05-11/[email protected]/atomic-mass) XIOC detected URL: https://openkim.org/properties/show/2016-05-11/[email protected]/atomic-mass)
extracted_from_files
detected URL: https://www.gnu.org/software/units/). XIOC detected URL: https://www.gnu.org/software/units/).
extracted_from_files
detected URL: https://docs.lammps.org/neigh_modify.html), XIOC detected URL: https://docs.lammps.org/neigh_modify.html),
extracted_from_files
detected URL: https://docs.lammps.org/atom_modify.html), XIOC detected URL: https://docs.lammps.org/atom_modify.html),
extracted_from_files
detected URL: https://docs.lammps.org/fix_viscosity.html), XIOC detected URL: https://docs.lammps.org/fix_viscosity.html),
extracted_from_files
detected URL: https://docs.lammps.org/pair_kim.html) XIOC detected URL: https://docs.lammps.org/pair_kim.html)
extracted_from_files
detected URL: https://openkim.org/kim-api/) XIOC detected URL: https://openkim.org/kim-api/)
extracted_from_files
detected URL: https://docs.lammps.org/pair_reaxff.html). XIOC detected URL: https://docs.lammps.org/pair_reaxff.html).
extracted_from_files
detected URL: https://docs.lammps.org/pair_reaxff.html) XIOC detected URL: https://docs.lammps.org/pair_reaxff.html)
extracted_from_files
detected URL: https://docs.lammps.org/delete_bonds.html) XIOC detected URL: https://docs.lammps.org/delete_bonds.html)
extracted_from_files
detected URL: https://docs.lammps.org/compute_smd_rho.html) XIOC detected URL: https://docs.lammps.org/compute_smd_rho.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_wall_srd.html) XIOC detected URL: https://docs.lammps.org/fix_wall_srd.html)
extracted_from_files
detected URL: https://docs.lammps.org/minimize.html). XIOC detected URL: https://docs.lammps.org/minimize.html).
extracted_from_files
detected URL: https://docs.lammps.org/comm_modify.html) XIOC detected URL: https://docs.lammps.org/comm_modify.html)
extracted_from_files
detected URL: https://docs.lammps.org/units.html) XIOC detected URL: https://docs.lammps.org/units.html)
extracted_from_files
detected URL: https://docs.lammps.org/run.html), XIOC detected URL: https://docs.lammps.org/run.html),
extracted_from_files
detected URL: https://docs.lammps.org/fix_dt_reset.html), XIOC detected URL: https://docs.lammps.org/fix_dt_reset.html),
extracted_from_files
detected URL: https://docs.lammps.org/angle_hybrid.html) XIOC detected URL: https://docs.lammps.org/angle_hybrid.html)
extracted_from_files
detected URL: https://docs.lammps.org/pair_gauss.html) XIOC detected URL: https://docs.lammps.org/pair_gauss.html)
extracted_from_files
detected URL: https://docs.lammps.org/improper_zero.html) XIOC detected URL: https://docs.lammps.org/improper_zero.html)
extracted_from_files
detected URL: https://docs.lammps.org/compute_fep.html) XIOC detected URL: https://docs.lammps.org/compute_fep.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_adapt_fep.html), XIOC detected URL: https://docs.lammps.org/fix_adapt_fep.html),
extracted_from_files
detected URL: https://docs.lammps.org/fix_adapt.html), XIOC detected URL: https://docs.lammps.org/fix_adapt.html),
extracted_from_files
detected URL: https://docs.lammps.org/compute_fep.html)) XIOC detected URL: https://docs.lammps.org/compute_fep.html))
extracted_from_files
detected URL: https://docs.lammps.org/pair_class2.html). XIOC detected URL: https://docs.lammps.org/pair_class2.html).
extracted_from_files
detected URL: https://docs.lammps.org/pair_class2.html)). XIOC detected URL: https://docs.lammps.org/pair_class2.html)).
extracted_from_files
detected URL: https://docs.lammps.org/compute_pace.html). XIOC detected URL: https://docs.lammps.org/compute_pace.html).
extracted_from_files
detected URL: https://docs.lammps.org/velocity.html) XIOC detected URL: https://docs.lammps.org/velocity.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_nh.html). XIOC detected URL: https://docs.lammps.org/fix_nh.html).
extracted_from_files
detected URL: https://docs.lammps.org/improper_style.html) XIOC detected URL: https://docs.lammps.org/improper_style.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_shake.html) XIOC detected URL: https://docs.lammps.org/fix_shake.html)
extracted_from_files
detected URL: https://docs.lammps.org/special_bonds.html), XIOC detected URL: https://docs.lammps.org/special_bonds.html),
extracted_from_files
detected URL: https://github.com/ICAMS/python-ace). XIOC detected URL: https://github.com/ICAMS/python-ace).
extracted_from_files
detected URL: https://github.com/FitSNAP/FitSNAP) XIOC detected URL: https://github.com/FitSNAP/FitSNAP)
extracted_from_files
detected URL: https://docs.lammps.org/pair_pace.html), XIOC detected URL: https://docs.lammps.org/pair_pace.html),
extracted_from_files
detected URL: https://docs.lammps.org/pair_pace.html). XIOC detected URL: https://docs.lammps.org/pair_pace.html).
extracted_from_files
detected URL: https://github.com/qzhu2017/PyXtal_FF) XIOC detected URL: https://github.com/qzhu2017/PyXtal_FF)
extracted_from_files
detected URL: https://docs.lammps.org/pair_snap.html). XIOC detected URL: https://docs.lammps.org/pair_snap.html).
extracted_from_files
detected URL: https://docs.lammps.org/pair_comb.html). XIOC detected URL: https://docs.lammps.org/pair_comb.html).
extracted_from_files
detected URL: https://docs.lammps.org/atc_control_momentum.html) XIOC detected URL: https://docs.lammps.org/atc_control_momentum.html)
extracted_from_files
detected URL: https://docs.lammps.org/compute_mliap.html) XIOC detected URL: https://docs.lammps.org/compute_mliap.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_rheo_oxidation.html). XIOC detected URL: https://docs.lammps.org/fix_rheo_oxidation.html).
extracted_from_files
detected URL: https://docs.lammps.org/fix_rheo_thermal.html), XIOC detected URL: https://docs.lammps.org/fix_rheo_thermal.html),
extracted_from_files
detected URL: https://docs.lammps.org/Howto_rheo.html). XIOC detected URL: https://docs.lammps.org/Howto_rheo.html).
extracted_from_files
detected URL: https://docs.lammps.org/pair_gran.html) XIOC detected URL: https://docs.lammps.org/pair_gran.html)
extracted_from_files
detected URL: https://docs.lammps.org/atom_style.html). XIOC detected URL: https://docs.lammps.org/atom_style.html).
extracted_from_files
detected URL: https://docs.lammps.org/compute_temp_region.html) XIOC detected URL: https://docs.lammps.org/compute_temp_region.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_nh.html) XIOC detected URL: https://docs.lammps.org/fix_nh.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_rheo_thermal.html). XIOC detected URL: https://docs.lammps.org/fix_rheo_thermal.html).
extracted_from_files
detected URL: https://docs.lammps.org/fix_rheo_pressure.html). XIOC detected URL: https://docs.lammps.org/fix_rheo_pressure.html).
extracted_from_files
detected URL: https://docs.lammps.org/atc_mesh_write.html) XIOC detected URL: https://docs.lammps.org/atc_mesh_write.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_mesh_read.html) XIOC detected URL: https://docs.lammps.org/atc_mesh_read.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_mesh_quadrature.html) XIOC detected URL: https://docs.lammps.org/atc_mesh_quadrature.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_mesh_create.html) XIOC detected URL: https://docs.lammps.org/atc_mesh_create.html)
extracted_from_files
detected URL: https://docs.lammps.org/thermo_style.html). XIOC detected URL: https://docs.lammps.org/thermo_style.html).
extracted_from_files
detected URL: https://docs.lammps.org/fix.html). XIOC detected URL: https://docs.lammps.org/fix.html).
extracted_from_files
detected URL: https://docs.lammps.org/atc_mesh_nodeset_to_elementset.html) XIOC detected URL: https://docs.lammps.org/atc_mesh_nodeset_to_elementset.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_mesh_delete_elements.html) XIOC detected URL: https://docs.lammps.org/atc_mesh_delete_elements.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_mesh_create_elementset.html) XIOC detected URL: https://docs.lammps.org/atc_mesh_create_elementset.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_mesh_create_faceset_plane.html) XIOC detected URL: https://docs.lammps.org/atc_mesh_create_faceset_plane.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_mesh_create_faceset_box.html) XIOC detected URL: https://docs.lammps.org/atc_mesh_create_faceset_box.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_mesh_add_to_nodeset.html) XIOC detected URL: https://docs.lammps.org/atc_mesh_add_to_nodeset.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_mesh_create_nodeset.html) XIOC detected URL: https://docs.lammps.org/atc_mesh_create_nodeset.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_initial.html) XIOC detected URL: https://docs.lammps.org/atc_initial.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_decomposition.html) XIOC detected URL: https://docs.lammps.org/atc_decomposition.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_internal_element_set.html) XIOC detected URL: https://docs.lammps.org/atc_internal_element_set.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_electron_integration.html) XIOC detected URL: https://docs.lammps.org/atc_electron_integration.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_time_integration.html) XIOC detected URL: https://docs.lammps.org/atc_time_integration.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_internal_quadrature.html) XIOC detected URL: https://docs.lammps.org/atc_internal_quadrature.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_boundary_type.html) XIOC detected URL: https://docs.lammps.org/atc_boundary_type.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_control_thermal.html) XIOC detected URL: https://docs.lammps.org/atc_control_thermal.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_remove_source.html) XIOC detected URL: https://docs.lammps.org/atc_remove_source.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_source.html) XIOC detected URL: https://docs.lammps.org/atc_source.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_unfix_flux.html) XIOC detected URL: https://docs.lammps.org/atc_unfix_flux.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_fix_flux.html) XIOC detected URL: https://docs.lammps.org/atc_fix_flux.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_unfix.html) XIOC detected URL: https://docs.lammps.org/atc_unfix.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_fix.html) XIOC detected URL: https://docs.lammps.org/atc_fix.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_filter_type.html) XIOC detected URL: https://docs.lammps.org/atc_filter_type.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_filter_scale.html) XIOC detected URL: https://docs.lammps.org/atc_filter_scale.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_time_filter.html) XIOC detected URL: https://docs.lammps.org/atc_time_filter.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_mask_direction.html) XIOC detected URL: https://docs.lammps.org/atc_mask_direction.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_lumped_lambda_solve.html) XIOC detected URL: https://docs.lammps.org/atc_lumped_lambda_solve.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_control_localized_lambda.html) XIOC detected URL: https://docs.lammps.org/atc_control_localized_lambda.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_output_boundary_integral.html) XIOC detected URL: https://docs.lammps.org/atc_output_boundary_integral.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_output_volume_integral.html) XIOC detected URL: https://docs.lammps.org/atc_output_volume_integral.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_output_nodeset.html) XIOC detected URL: https://docs.lammps.org/atc_output_nodeset.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_output.html) XIOC detected URL: https://docs.lammps.org/atc_output.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_poisson_solver.html) XIOC detected URL: https://docs.lammps.org/atc_poisson_solver.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_extrinsic_exchange.html) XIOC detected URL: https://docs.lammps.org/atc_extrinsic_exchange.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_equilibrium_start.html) XIOC detected URL: https://docs.lammps.org/atc_equilibrium_start.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_hardy_gradients.html) XIOC detected URL: https://docs.lammps.org/atc_hardy_gradients.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_hardy_fields.html) XIOC detected URL: https://docs.lammps.org/atc_hardy_fields.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_hardy_kernel.html) XIOC detected URL: https://docs.lammps.org/atc_hardy_kernel.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_read_restart.html) XIOC detected URL: https://docs.lammps.org/atc_read_restart.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_write_restart.html) XIOC detected URL: https://docs.lammps.org/atc_write_restart.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_mesh_output.html) XIOC detected URL: https://docs.lammps.org/atc_mesh_output.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_output_contour_integral.html) XIOC detected URL: https://docs.lammps.org/atc_output_contour_integral.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_set_reference_pe.html) XIOC detected URL: https://docs.lammps.org/atc_set_reference_pe.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_sample_frequency.html) XIOC detected URL: https://docs.lammps.org/atc_sample_frequency.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_pair_interactions.html) XIOC detected URL: https://docs.lammps.org/atc_pair_interactions.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_hardy_on_the_fly.html) XIOC detected URL: https://docs.lammps.org/atc_hardy_on_the_fly.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_hardy_computes.html) XIOC detected URL: https://docs.lammps.org/atc_hardy_computes.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_hardy_rates.html) XIOC detected URL: https://docs.lammps.org/atc_hardy_rates.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_boundary_faceset.html) XIOC detected URL: https://docs.lammps.org/atc_boundary_faceset.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_fe_md_boundary.html) XIOC detected URL: https://docs.lammps.org/atc_fe_md_boundary.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_reset_atomic_reference.html) XIOC detected URL: https://docs.lammps.org/atc_reset_atomic_reference.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_reset_time.html) XIOC detected URL: https://docs.lammps.org/atc_reset_time.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_kernel_bandwidth.html) XIOC detected URL: https://docs.lammps.org/atc_kernel_bandwidth.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_write_atom_weights.html) XIOC detected URL: https://docs.lammps.org/atc_write_atom_weights.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_atom_weight.html) XIOC detected URL: https://docs.lammps.org/atc_atom_weight.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_track_displacement.html) XIOC detected URL: https://docs.lammps.org/atc_track_displacement.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_temperature_definition.html) XIOC detected URL: https://docs.lammps.org/atc_temperature_definition.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_source_integration.html) XIOC detected URL: https://docs.lammps.org/atc_source_integration.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_atomic_charge.html) XIOC detected URL: https://docs.lammps.org/atc_atomic_charge.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_material.html) XIOC detected URL: https://docs.lammps.org/atc_material.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_mass_matrix.html) XIOC detected URL: https://docs.lammps.org/atc_mass_matrix.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_consistent_fe_initialization.html) XIOC detected URL: https://docs.lammps.org/atc_consistent_fe_initialization.html)
extracted_from_files
detected URL: https://docs.lammps.org/compute_saed.html) XIOC detected URL: https://docs.lammps.org/compute_saed.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_ave_histo.html), XIOC detected URL: https://docs.lammps.org/fix_ave_histo.html),
extracted_from_files
detected URL: https://docs.lammps.org/atc_remove_molecule.html) XIOC detected URL: https://docs.lammps.org/atc_remove_molecule.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_remove_species.html) XIOC detected URL: https://docs.lammps.org/atc_remove_species.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_add_molecule.html) XIOC detected URL: https://docs.lammps.org/atc_add_molecule.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_add_species.html) XIOC detected URL: https://docs.lammps.org/atc_add_species.html)
extracted_from_files
detected URL: https://docs.lammps.org/atc_boundary_dynamics.html) XIOC detected URL: https://docs.lammps.org/atc_boundary_dynamics.html)
extracted_from_files
detected URL: https://docs.lammps.org/compute_bond_local.html) XIOC detected URL: https://docs.lammps.org/compute_bond_local.html)
extracted_from_files
detected URL: https://docs.lammps.org/compute_pair.html) XIOC detected URL: https://docs.lammps.org/compute_pair.html)
extracted_from_files
detected URL: https://docs.lammps.org/Howto_bioFF.html) XIOC detected URL: https://docs.lammps.org/Howto_bioFF.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_qtpie_reaxff.html) XIOC detected URL: https://docs.lammps.org/fix_qtpie_reaxff.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_qeq_reaxff.html) XIOC detected URL: https://docs.lammps.org/fix_qeq_reaxff.html)
extracted_from_files
detected URL: https://docs.lammps.org/read_data.html) XIOC detected URL: https://docs.lammps.org/read_data.html)
extracted_from_files
detected URL: https://docs.lammps.org/angle_coeff.html) XIOC detected URL: https://docs.lammps.org/angle_coeff.html)
extracted_from_files
detected URL: https://docs.lammps.org/angle_table.html). XIOC detected URL: https://docs.lammps.org/angle_table.html).
extracted_from_files
detected URL: https://docs.lammps.org/comm_modify.html). XIOC detected URL: https://docs.lammps.org/comm_modify.html).
extracted_from_files
detected URL: https://arxiv.org/abs/1610.02098 XIOC detected URL: https://arxiv.org/abs/1610.02098
extracted_from_files
detected URL: https://docs.lammps.org/fix_nve_bpm_sphere.html) XIOC detected URL: https://docs.lammps.org/fix_nve_bpm_sphere.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_smd_adjust_dt.html) XIOC detected URL: https://docs.lammps.org/fix_smd_adjust_dt.html)
extracted_from_files
detected URL: https://docs.lammps.org/angle_style.html), XIOC detected URL: https://docs.lammps.org/angle_style.html),
extracted_from_files
detected URL: https://docs.lammps.org/dihedral_write.html), XIOC detected URL: https://docs.lammps.org/dihedral_write.html),
extracted_from_files
detected URL: https://docs.lammps.org/bond_write.html), XIOC detected URL: https://docs.lammps.org/bond_write.html),
extracted_from_files
detected URL: https://docs.lammps.org/angle_table.html), XIOC detected URL: https://docs.lammps.org/angle_table.html),
extracted_from_files
detected URL: https://docs.lammps.org/dihedral_style.html), XIOC detected URL: https://docs.lammps.org/dihedral_style.html),
extracted_from_files
detected URL: https://docs.lammps.org/bond_style.html), XIOC detected URL: https://docs.lammps.org/bond_style.html),
extracted_from_files
detected URL: https://docs.lammps.org/atom_style.html), XIOC detected URL: https://docs.lammps.org/atom_style.html),
extracted_from_files
detected URL: https://gingrich.chem.northwestern.edu/papers/ThesiswCorrections.pdf XIOC detected URL: https://gingrich.chem.northwestern.edu/papers/ThesiswCorrections.pdf
extracted_from_files
detected URL: https://docs.lammps.org/kspace_modify.html). XIOC detected URL: https://docs.lammps.org/kspace_modify.html).
extracted_from_files
detected URL: https://docs.lammps.org/compute_temp_deform_eff.html) XIOC detected URL: https://docs.lammps.org/compute_temp_deform_eff.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_nve_eff.html), XIOC detected URL: https://docs.lammps.org/fix_nve_eff.html),
extracted_from_files
detected URL: https://docs.lammps.org/dihedral_charmm.html), XIOC detected URL: https://docs.lammps.org/dihedral_charmm.html),
extracted_from_files
detected URL: https://docs.lammps.org/angle_charmm.html), XIOC detected URL: https://docs.lammps.org/angle_charmm.html),
extracted_from_files
detected URL: https://docs.lammps.org/fix_addforce.html) XIOC detected URL: https://docs.lammps.org/fix_addforce.html)
extracted_from_files
detected URL: https://docs.lammps.org/Run_options.html) XIOC detected URL: https://docs.lammps.org/Run_options.html)
extracted_from_files
detected URL: https://docs.lammps.org/compute_fep.html), XIOC detected URL: https://docs.lammps.org/compute_fep.html),
extracted_from_files
detected URL: https://docs.lammps.org/atom_style.html)), XIOC detected URL: https://docs.lammps.org/atom_style.html)),
extracted_from_files
detected URL: https://docs.lammps.org/compute_fep.html). XIOC detected URL: https://docs.lammps.org/compute_fep.html).
extracted_from_files
detected URL: https://docs.lammps.org/fix_ave_time.html). XIOC detected URL: https://docs.lammps.org/fix_ave_time.html).
extracted_from_files
detected URL: https://docs.lammps.org/fix_cmap.html) XIOC detected URL: https://docs.lammps.org/fix_cmap.html)
extracted_from_files
detected URL: https://docs.lammps.org/angle_cosine_squared.html) XIOC detected URL: https://docs.lammps.org/angle_cosine_squared.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_modify.html) XIOC detected URL: https://docs.lammps.org/fix_modify.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_npt_body.html), XIOC detected URL: https://docs.lammps.org/fix_npt_body.html),
extracted_from_files
detected URL: https://docs.lammps.org/fix_sph.html) XIOC detected URL: https://docs.lammps.org/fix_sph.html)
extracted_from_files
detected URL: https://docs.lammps.org/pair_table.html), XIOC detected URL: https://docs.lammps.org/pair_table.html),
extracted_from_files
detected URL: https://docs.lammps.org/pair_fep_soft.html) XIOC detected URL: https://docs.lammps.org/pair_fep_soft.html)
extracted_from_files
detected URL: https://docs.lammps.org/compute_stress_atom.html) XIOC detected URL: https://docs.lammps.org/compute_stress_atom.html)
extracted_from_files
detected URL: https://docs.lammps.org/Howto_kappa.html) XIOC detected URL: https://docs.lammps.org/Howto_kappa.html)
extracted_from_files
detected URL: https://docs.lammps.org/dihedral_cosine_shift_exp.html) XIOC detected URL: https://docs.lammps.org/dihedral_cosine_shift_exp.html)
extracted_from_files
detected URL: https://docs.lammps.org/angle_cosine_shift.html), XIOC detected URL: https://docs.lammps.org/angle_cosine_shift.html),
extracted_from_files
detected URL: https://docs.lammps.org/angle_coeff.html), XIOC detected URL: https://docs.lammps.org/angle_coeff.html),
extracted_from_files
detected URL: https://docs.lammps.org/Howto_amoeba.html) XIOC detected URL: https://docs.lammps.org/Howto_amoeba.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_ave_correlate.html), XIOC detected URL: https://docs.lammps.org/fix_ave_correlate.html),
extracted_from_files
detected URL: https://docs.lammps.org/fix_thermal_conductivity.html), XIOC detected URL: https://docs.lammps.org/fix_thermal_conductivity.html),
extracted_from_files
detected URL: https://docs.lammps.org/fix_rigid.html) XIOC detected URL: https://docs.lammps.org/fix_rigid.html)
extracted_from_files
detected URL: https://docs.lammps.org/compute_stress_atom.html), XIOC detected URL: https://docs.lammps.org/compute_stress_atom.html),
extracted_from_files
detected URL: https://docs.lammps.org/fix_rigid.html)). XIOC detected URL: https://docs.lammps.org/fix_rigid.html)).
extracted_from_files
detected URL: https://docs.lammps.org/fix_shake.html). XIOC detected URL: https://docs.lammps.org/fix_shake.html).
extracted_from_files
detected URL: https://docs.lammps.org/fix_heat.html)) XIOC detected URL: https://docs.lammps.org/fix_heat.html))
extracted_from_files
detected URL: https://docs.lammps.org/units.html), XIOC detected URL: https://docs.lammps.org/units.html),
extracted_from_files
detected URL: https://docs.lammps.org/bond_coeff.html) XIOC detected URL: https://docs.lammps.org/bond_coeff.html)
extracted_from_files
detected URL: https://docs.lammps.org/compute_efield_atom.html) XIOC detected URL: https://docs.lammps.org/compute_efield_atom.html)
extracted_from_files
detected URL: https://docs.lammps.org/pair_dielectric.html), XIOC detected URL: https://docs.lammps.org/pair_dielectric.html),
extracted_from_files
detected URL: https://docs.lammps.org/fix.html) XIOC detected URL: https://docs.lammps.org/fix.html)
extracted_from_files
detected URL: https://docs.lammps.org/compute_plasticity_atom.html) XIOC detected URL: https://docs.lammps.org/compute_plasticity_atom.html)
extracted_from_files
detected URL: https://docs.lammps.org/pair_eam.html), XIOC detected URL: https://docs.lammps.org/pair_eam.html),
extracted_from_files
detected URL: https://docs.lammps.org/pair_spin_exchange.html), XIOC detected URL: https://docs.lammps.org/pair_spin_exchange.html),
extracted_from_files
detected URL: https://docs.lammps.org/fix_nve_spin.html)), XIOC detected URL: https://docs.lammps.org/fix_nve_spin.html)),
extracted_from_files
detected URL: https://docs.lammps.org/Errors_messages.html)). XIOC detected URL: https://docs.lammps.org/Errors_messages.html)).
extracted_from_files
detected URL: https://docs.lammps.org/fix_msst.html) XIOC detected URL: https://docs.lammps.org/fix_msst.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_qtb.html), XIOC detected URL: https://docs.lammps.org/fix_qtb.html),
extracted_from_files
detected URL: https://docs.lammps.org/fix_qtb.html). XIOC detected URL: https://docs.lammps.org/fix_qtb.html).
extracted_from_files
detected URL: https://docs.lammps.org/fix_msst.html). XIOC detected URL: https://docs.lammps.org/fix_msst.html).
extracted_from_files
detected URL: https://docs.lammps.org/shell.html) XIOC detected URL: https://docs.lammps.org/shell.html)
extracted_from_files
detected URL: https://curl.se/libcurl/). XIOC detected URL: https://curl.se/libcurl/).
extracted_from_files
detected URL: https://download.lammps.org/tars/SHA256SUMS XIOC detected URL: https://download.lammps.org/tars/SHA256SUMS
extracted_from_files
detected URL: https://everything.curl.dev/usingcurl/proxies/env.html XIOC detected URL: https://everything.curl.dev/usingcurl/proxies/env.html
extracted_from_files
detected URL: https://github.com/lammps/lammps/blob/develop/bench/in.lj XIOC detected URL: https://github.com/lammps/lammps/blob/develop/bench/in.lj
extracted_from_files
detected URL: https://www.ctcms.nist.gov/potentials/Download/1990--Ackland-G-J-Vitek-V--Cu/2/Cu2.eam.fs XIOC detected URL: https://www.ctcms.nist.gov/potentials/Download/1990--Ackland-G-J-Vitek-V--Cu/2/Cu2.eam.fs
extracted_from_files
detected URL: https://docs.lammps.org/compute_edpd_temp_atom.html), XIOC detected URL: https://docs.lammps.org/compute_edpd_temp_atom.html),
extracted_from_files
detected URL: https://docs.lammps.org/fix_dpd_source.html), XIOC detected URL: https://docs.lammps.org/fix_dpd_source.html),
extracted_from_files
detected URL: https://docs.lammps.org/fix_mvv_dpd.html), XIOC detected URL: https://docs.lammps.org/fix_mvv_dpd.html),
extracted_from_files
detected URL: https://docs.lammps.org/bond_none.html) XIOC detected URL: https://docs.lammps.org/bond_none.html)
extracted_from_files
detected URL: https://docs.lammps.org/bond_bpm_rotational.html) XIOC detected URL: https://docs.lammps.org/bond_bpm_rotational.html)
extracted_from_files
detected URL: https://docs.lammps.org/Commands_bond.html) XIOC detected URL: https://docs.lammps.org/Commands_bond.html)
extracted_from_files
detected URL: https://docs.lammps.org/pair_style.html) XIOC detected URL: https://docs.lammps.org/pair_style.html)
extracted_from_files
detected URL: https://docs.lammps.org/Morris XIOC detected URL: https://docs.lammps.org/Morris
extracted_from_files
detected URL: https://docs.lammps.org/pair_born.html) XIOC detected URL: https://docs.lammps.org/pair_born.html)
extracted_from_files
detected URL: https://docs.lammps.org/compute_tdpd_cc_atom.html) XIOC detected URL: https://docs.lammps.org/compute_tdpd_cc_atom.html)
extracted_from_files
detected URL: https://docs.lammps.org/bond_special.html) XIOC detected URL: https://docs.lammps.org/bond_special.html)
extracted_from_files
detected URL: https://docs.lammps.org/bond_rheo_shell.html) XIOC detected URL: https://docs.lammps.org/bond_rheo_shell.html)
extracted_from_files
detected URL: https://docs.lammps.org/bond_oxdna.html) XIOC detected URL: https://docs.lammps.org/bond_oxdna.html)
extracted_from_files
detected URL: https://docs.lammps.org/bond_mesocnt.html) XIOC detected URL: https://docs.lammps.org/bond_mesocnt.html)
extracted_from_files
detected URL: https://docs.lammps.org/bond_lepton.html) XIOC detected URL: https://docs.lammps.org/bond_lepton.html)
extracted_from_files
detected URL: https://docs.lammps.org/bond_bpm_spring_plastic.html) XIOC detected URL: https://docs.lammps.org/bond_bpm_spring_plastic.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_balance.html) XIOC detected URL: https://docs.lammps.org/fix_balance.html)
extracted_from_files
detected URL: https://docs.lammps.org/balance.html), XIOC detected URL: https://docs.lammps.org/balance.html),
extracted_from_files
detected URL: https://docs.lammps.org/processors.html), XIOC detected URL: https://docs.lammps.org/processors.html),
extracted_from_files
detected URL: https://docs.lammps.org/comm_modify.html), XIOC detected URL: https://docs.lammps.org/comm_modify.html),
extracted_from_files
detected URL: https://docs.lammps.org/processors.html) XIOC detected URL: https://docs.lammps.org/processors.html)
extracted_from_files
detected URL: https://docs.lammps.org/read_restart.html) XIOC detected URL: https://docs.lammps.org/read_restart.html)
extracted_from_files
detected URL: https://docs.lammps.org/create_box.html) XIOC detected URL: https://docs.lammps.org/create_box.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_gcmc.html) XIOC detected URL: https://docs.lammps.org/fix_gcmc.html)
extracted_from_files
detected URL: https://docs.lammps.org/pair_charmm.html), XIOC detected URL: https://docs.lammps.org/pair_charmm.html),
extracted_from_files
detected URL: https://docs.lammps.org/pair_resquared.html) XIOC detected URL: https://docs.lammps.org/pair_resquared.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_wall.html), XIOC detected URL: https://docs.lammps.org/fix_wall.html),
extracted_from_files
detected URL: https://docs.lammps.org/fix_deform.html). XIOC detected URL: https://docs.lammps.org/fix_deform.html).
extracted_from_files
detected URL: https://docs.lammps.org/compute_temp_drude.html), XIOC detected URL: https://docs.lammps.org/compute_temp_drude.html),
extracted_from_files
detected URL: https://docs.lammps.org/fix_drude_transform.html), XIOC detected URL: https://docs.lammps.org/fix_drude_transform.html),
extracted_from_files
detected URL: https://docs.lammps.org/fix_langevin_drude.html), XIOC detected URL: https://docs.lammps.org/fix_langevin_drude.html),
extracted_from_files
detected URL: https://docs.lammps.org/fix_evaporate.html), XIOC detected URL: https://docs.lammps.org/fix_evaporate.html),
extracted_from_files
detected URL: https://docs.lammps.org/fix_atom_swap.html), XIOC detected URL: https://docs.lammps.org/fix_atom_swap.html),
extracted_from_files
detected URL: https://docs.lammps.org/fix_wall.html) XIOC detected URL: https://docs.lammps.org/fix_wall.html)
extracted_from_files
detected URL: https://docs.lammps.org/pair_lubricate.html) XIOC detected URL: https://docs.lammps.org/pair_lubricate.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_deform.html) XIOC detected URL: https://docs.lammps.org/fix_deform.html)
extracted_from_files
detected URL: https://docs.lammps.org/compute.html) XIOC detected URL: https://docs.lammps.org/compute.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_smd_integrate_ulsph.html) XIOC detected URL: https://docs.lammps.org/fix_smd_integrate_ulsph.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_qeq_reaxff.html), XIOC detected URL: https://docs.lammps.org/fix_qeq_reaxff.html),
extracted_from_files
detected URL: https://docs.lammps.org/pair_lj.html) XIOC detected URL: https://docs.lammps.org/pair_lj.html)
extracted_from_files
detected URL: https://docs.lammps.org/pair_tersoff.html), XIOC detected URL: https://docs.lammps.org/pair_tersoff.html),
extracted_from_files
detected URL: https://docs.lammps.org/pair_sw.html), XIOC detected URL: https://docs.lammps.org/pair_sw.html),
extracted_from_files
detected URL: https://docs.lammps.org/fix_wall_gran.html) XIOC detected URL: https://docs.lammps.org/fix_wall_gran.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_setforce.html). XIOC detected URL: https://docs.lammps.org/fix_setforce.html).
extracted_from_files
detected URL: https://docs.lammps.org/fix_ave_correlate_long.html), XIOC detected URL: https://docs.lammps.org/fix_ave_correlate_long.html),
extracted_from_files
detected URL: https://docs.lammps.org/variable.html)). XIOC detected URL: https://docs.lammps.org/variable.html)).
extracted_from_files
detected URL: https://docs.lammps.org/thermo_style.html) XIOC detected URL: https://docs.lammps.org/thermo_style.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_efield.html). XIOC detected URL: https://docs.lammps.org/fix_efield.html).
extracted_from_files
detected URL: https://docs.lammps.org/compute_modify.html), XIOC detected URL: https://docs.lammps.org/compute_modify.html),
extracted_from_files
detected URL: https://docs.lammps.org/fix_atom_swap.html)), XIOC detected URL: https://docs.lammps.org/fix_atom_swap.html)),
extracted_from_files
detected URL: https://docs.lammps.org/pair_meam.html) XIOC detected URL: https://docs.lammps.org/pair_meam.html)
extracted_from_files
detected URL: https://docs.lammps.org/compute_temp.html) XIOC detected URL: https://docs.lammps.org/compute_temp.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_setforce.html) XIOC detected URL: https://docs.lammps.org/fix_setforce.html)
extracted_from_files
detected URL: https://docs.lammps.org/delete_bonds.html), XIOC detected URL: https://docs.lammps.org/delete_bonds.html),
extracted_from_files
detected URL: https://docs.lammps.org/pair_dpd.html) XIOC detected URL: https://docs.lammps.org/pair_dpd.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_viscous.html), XIOC detected URL: https://docs.lammps.org/fix_viscous.html),
extracted_from_files
detected URL: https://docs.lammps.org/run_style.html) XIOC detected URL: https://docs.lammps.org/run_style.html)
extracted_from_files
detected URL: https://docs.lammps.org/compute_adf.html) XIOC detected URL: https://docs.lammps.org/compute_adf.html)
extracted_from_files
detected URL: https://docs.lammps.org/bond_quartic.html) XIOC detected URL: https://docs.lammps.org/bond_quartic.html)
extracted_from_files
detected URL: https://docs.lammps.org/bond_harmonic.html) XIOC detected URL: https://docs.lammps.org/bond_harmonic.html)
extracted_from_files
detected URL: https://docs.lammps.org/bond_morse.html), XIOC detected URL: https://docs.lammps.org/bond_morse.html),
extracted_from_files
detected URL: https://docs.lammps.org/pair_lj.html), XIOC detected URL: https://docs.lammps.org/pair_lj.html),
extracted_from_files
detected URL: https://docs.lammps.org/bond_harmonic_shift.html) XIOC detected URL: https://docs.lammps.org/bond_harmonic_shift.html)
extracted_from_files
detected URL: https://docs.lammps.org/bond_harmonic.html), XIOC detected URL: https://docs.lammps.org/bond_harmonic.html),
extracted_from_files
detected URL: https://docs.lammps.org/dihedral_table.html), XIOC detected URL: https://docs.lammps.org/dihedral_table.html),
extracted_from_files
detected URL: https://docs.lammps.org/dihedral_class2.html). XIOC detected URL: https://docs.lammps.org/dihedral_class2.html).
extracted_from_files
detected URL: https://docs.lammps.org/dihedral_table.html). XIOC detected URL: https://docs.lammps.org/dihedral_table.html).
extracted_from_files
detected URL: https://docs.lammps.org/dihedral_coeff.html) XIOC detected URL: https://docs.lammps.org/dihedral_coeff.html)
extracted_from_files
detected URL: https://docs.lammps.org/compute_smd_hourglass_error.html) XIOC detected URL: https://docs.lammps.org/compute_smd_hourglass_error.html)
extracted_from_files
detected URL: https://docs.lammps.org/compute_sna_atom.html). XIOC detected URL: https://docs.lammps.org/compute_sna_atom.html).
extracted_from_files
detected URL: https://github.com/FitSNAP/FitSNAP). XIOC detected URL: https://github.com/FitSNAP/FitSNAP).
extracted_from_files
detected URL: https://docs.lammps.org/pair_pace.html)) XIOC detected URL: https://docs.lammps.org/pair_pace.html))
extracted_from_files
detected URL: https://docs.lammps.org/angle_write.html), XIOC detected URL: https://docs.lammps.org/angle_write.html),
extracted_from_files
detected URL: https://docs.lammps.org/pair_tersoff.html) XIOC detected URL: https://docs.lammps.org/pair_tersoff.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_smd.html) XIOC detected URL: https://docs.lammps.org/fix_smd.html)
extracted_from_files
detected URL: https://docs.lammps.org/bond_lepton.html),[dihedral_style XIOC detected URL: https://docs.lammps.org/bond_lepton.html),[dihedral_style
extracted_from_files
detected URL: https://docs.lammps.org/compute_sna_atom.html) XIOC detected URL: https://docs.lammps.org/compute_sna_atom.html)
extracted_from_files
detected URL: https://docs.lammps.org/pair_snap.html) XIOC detected URL: https://docs.lammps.org/pair_snap.html)
extracted_from_files
detected URL: https://docs.lammps.org/pair_pace.html) XIOC detected URL: https://docs.lammps.org/pair_pace.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_grem.html), XIOC detected URL: https://docs.lammps.org/fix_grem.html),
extracted_from_files
detected URL: https://docs.lammps.org/compute_pressure_uef.html) XIOC detected URL: https://docs.lammps.org/compute_pressure_uef.html)
extracted_from_files
detected URL: https://docs.lammps.org/compute_temp.html). XIOC detected URL: https://docs.lammps.org/compute_temp.html).
extracted_from_files
detected URL: https://docs.lammps.org/compute_rheo_property_atom.html) XIOC detected URL: https://docs.lammps.org/compute_rheo_property_atom.html)
extracted_from_files
detected URL: https://docs.lammps.org/pair_kolmogorov_crespi_full.html). XIOC detected URL: https://docs.lammps.org/pair_kolmogorov_crespi_full.html).
extracted_from_files
detected URL: https://docs.lammps.org/fix_hyper_global.html), XIOC detected URL: https://docs.lammps.org/fix_hyper_global.html),
extracted_from_files
detected URL: https://docs.lammps.org/compute_erotate_rigid.html) XIOC detected URL: https://docs.lammps.org/compute_erotate_rigid.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_grem.html). XIOC detected URL: https://docs.lammps.org/fix_grem.html).
extracted_from_files
detected URL: https://docs.lammps.org/temper.html). XIOC detected URL: https://docs.lammps.org/temper.html).
extracted_from_files
detected URL: https://docs.lammps.org/temper.html) XIOC detected URL: https://docs.lammps.org/temper.html)
extracted_from_files
detected URL: https://docs.lammps.org/comm_style.html) XIOC detected URL: https://docs.lammps.org/comm_style.html)
extracted_from_files
detected URL: https://docs.lammps.org/run.html). XIOC detected URL: https://docs.lammps.org/run.html).
extracted_from_files
detected URL: https://docs.lammps.org/compute_dipole_chunk.html) XIOC detected URL: https://docs.lammps.org/compute_dipole_chunk.html)
extracted_from_files
detected URL: https://docs.lammps.org/compute_event_displace.html), XIOC detected URL: https://docs.lammps.org/compute_event_displace.html),
extracted_from_files
detected URL: https://docs.lammps.org/fix_hyper_local.html), XIOC detected URL: https://docs.lammps.org/fix_hyper_local.html),
extracted_from_files
detected URL: https://lammps.github.io/pizza) XIOC detected URL: https://lammps.github.io/pizza)
extracted_from_files
detected URL: https://docs.lammps.org/Run_output.html), XIOC detected URL: https://docs.lammps.org/Run_output.html),
extracted_from_files
detected URL: https://docs.lammps.org/comm_style.html). XIOC detected URL: https://docs.lammps.org/comm_style.html).
extracted_from_files
detected URL: https://docs.lammps.org/fix_ave_time.html), XIOC detected URL: https://docs.lammps.org/fix_ave_time.html),
extracted_from_files
detected URL: https://lammps.github.io/pizza XIOC detected URL: https://lammps.github.io/pizza
extracted_from_files
detected URL: https://docs.lammps.org/fix_balance.html), XIOC detected URL: https://docs.lammps.org/fix_balance.html),
extracted_from_files
detected URL: https://docs.lammps.org/fix_ave_atom.html) XIOC detected URL: https://docs.lammps.org/fix_ave_atom.html)
extracted_from_files
detected URL: https://docs.lammps.org/write_data.html) XIOC detected URL: https://docs.lammps.org/write_data.html)
extracted_from_files
detected URL: https://docs.lammps.org/write_restart.html), XIOC detected URL: https://docs.lammps.org/write_restart.html),
extracted_from_files
detected URL: https://docs.lammps.org/compute_pressure.html) XIOC detected URL: https://docs.lammps.org/compute_pressure.html)
extracted_from_files
detected URL: https://docs.lammps.org/units.html). XIOC detected URL: https://docs.lammps.org/units.html).
extracted_from_files
detected URL: https://docs.lammps.org/fix_temp_berendsen.html), XIOC detected URL: https://docs.lammps.org/fix_temp_berendsen.html),
extracted_from_files
detected URL: https://docs.lammps.org/pair_coul_shield.html). XIOC detected URL: https://docs.lammps.org/pair_coul_shield.html).
extracted_from_files
detected URL: https://docs.lammps.org/pair_hybrid.html) XIOC detected URL: https://docs.lammps.org/pair_hybrid.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_nh.html), XIOC detected URL: https://docs.lammps.org/fix_nh.html),
extracted_from_files
detected URL: https://docs.lammps.org/fix_temp_rescale.html)). XIOC detected URL: https://docs.lammps.org/fix_temp_rescale.html)).
extracted_from_files
detected URL: https://docs.lammps.org/fix_ave_chunk.html) XIOC detected URL: https://docs.lammps.org/fix_ave_chunk.html)
extracted_from_files
detected URL: https://docs.lammps.org/Howto_output.html). XIOC detected URL: https://docs.lammps.org/Howto_output.html).
extracted_from_files
detected URL: https://docs.lammps.org/fix_accelerate_cos.html) XIOC detected URL: https://docs.lammps.org/fix_accelerate_cos.html)
extracted_from_files
detected URL: https://docs.lammps.org/angle_spica.html) XIOC detected URL: https://docs.lammps.org/angle_spica.html)
extracted_from_files
detected URL: https://www.spica-ff.org XIOC detected URL: https://www.spica-ff.org
extracted_from_files
detected URL: https://docs.lammps.org/fix_atc.html) XIOC detected URL: https://docs.lammps.org/fix_atc.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_sph_stationary.html) XIOC detected URL: https://docs.lammps.org/fix_sph_stationary.html)
extracted_from_files
detected URL: https://docs.lammps.org/variable.html), XIOC detected URL: https://docs.lammps.org/variable.html),
extracted_from_files
detected URL: https://docs.lammps.org/compute_property_atom.html) XIOC detected URL: https://docs.lammps.org/compute_property_atom.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_ave_time.html) XIOC detected URL: https://docs.lammps.org/fix_ave_time.html)
extracted_from_files
detected URL: https://docs.lammps.org/dump.html) XIOC detected URL: https://docs.lammps.org/dump.html)
extracted_from_files
detected URL: https://github.com/ornladios/ADIOS2 XIOC detected URL: https://github.com/ornladios/ADIOS2
extracted_from_files
detected URL: https://docs.lammps.org/pair_spica.html). XIOC detected URL: https://docs.lammps.org/pair_spica.html).
extracted_from_files
detected URL: https://docs.lammps.org/pair_python.html), XIOC detected URL: https://docs.lammps.org/pair_python.html),
extracted_from_files
detected URL: https://docs.lammps.org/pair_lj_cut_coul.html). XIOC detected URL: https://docs.lammps.org/pair_lj_cut_coul.html).
extracted_from_files
detected URL: https://docs.lammps.org/compute_dpd.html) XIOC detected URL: https://docs.lammps.org/compute_dpd.html)
extracted_from_files
detected URL: https://docs.lammps.org/atom_style.html) XIOC detected URL: https://docs.lammps.org/atom_style.html)
extracted_from_files
detected URL: https://docs.lammps.org/restart.html). XIOC detected URL: https://docs.lammps.org/restart.html).
extracted_from_files
detected URL: https://docs.lammps.org/fix_spring_self.html)) XIOC detected URL: https://docs.lammps.org/fix_spring_self.html))
extracted_from_files
detected URL: https://docs.lammps.org/pair_spica.html), XIOC detected URL: https://docs.lammps.org/pair_spica.html),
extracted_from_files
detected URL: https://docs.lammps.org/angle_harmonic.html), XIOC detected URL: https://docs.lammps.org/angle_harmonic.html),
extracted_from_files
detected URL: https://docs.lammps.org/pair_charmm.html)) XIOC detected URL: https://docs.lammps.org/pair_charmm.html))
extracted_from_files
detected URL: https://docs.lammps.org/neb.html) XIOC detected URL: https://docs.lammps.org/neb.html)
extracted_from_files
detected URL: https://docs.lammps.org/set.html) XIOC detected URL: https://docs.lammps.org/set.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_plumed.html) XIOC detected URL: https://docs.lammps.org/fix_plumed.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_colvars.html), XIOC detected URL: https://docs.lammps.org/fix_colvars.html),
extracted_from_files
detected URL: https://docs.lammps.org/fix_spring_rg.html), XIOC detected URL: https://docs.lammps.org/fix_spring_rg.html),
extracted_from_files
detected URL: https://docs.lammps.org/compute_cna_atom.html) XIOC detected URL: https://docs.lammps.org/compute_cna_atom.html)
extracted_from_files
detected URL: https://docs.lammps.org/compute_centro_atom.html) XIOC detected URL: https://docs.lammps.org/compute_centro_atom.html)
extracted_from_files
detected URL: https://docs.lammps.org/dihedral_coeff.html), XIOC detected URL: https://docs.lammps.org/dihedral_coeff.html),
extracted_from_files
detected URL: https://docs.lammps.org/Howto_rheo.html) XIOC detected URL: https://docs.lammps.org/Howto_rheo.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_spring_rg.html) XIOC detected URL: https://docs.lammps.org/fix_spring_rg.html)
extracted_from_files
detected URL: https://docs.lammps.org/compute_chunk_atom.html) XIOC detected URL: https://docs.lammps.org/compute_chunk_atom.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_qeq_rel_reaxff.html) XIOC detected URL: https://docs.lammps.org/fix_qeq_rel_reaxff.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_acks2_reaxff.html), XIOC detected URL: https://docs.lammps.org/fix_acks2_reaxff.html),
extracted_from_files
detected URL: https://docs.lammps.org/pair_dpd_ext.html), XIOC detected URL: https://docs.lammps.org/pair_dpd_ext.html),
extracted_from_files
detected URL: https://docs.lammps.org/Examples.html) XIOC detected URL: https://docs.lammps.org/Examples.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_rheo_viscosity.html), XIOC detected URL: https://docs.lammps.org/fix_rheo_viscosity.html),
extracted_from_files
detected URL: https://docs.lammps.org/fix_rheo.html), XIOC detected URL: https://docs.lammps.org/fix_rheo.html),
extracted_from_files
detected URL: https://docs.lammps.org/fix_adapt.html) XIOC detected URL: https://docs.lammps.org/fix_adapt.html)
extracted_from_files
detected URL: https://docs.lammps.org/variable.html). XIOC detected URL: https://docs.lammps.org/variable.html).
extracted_from_files
detected URL: https://docs.lammps.org/kspace_style.html) XIOC detected URL: https://docs.lammps.org/kspace_style.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_mvv_dpd.html). XIOC detected URL: https://docs.lammps.org/fix_mvv_dpd.html).
extracted_from_files
detected URL: https://docs.lammps.org/python.html). XIOC detected URL: https://docs.lammps.org/python.html).
extracted_from_files
detected URL: https://docs.lammps.org/fix_setforce.html)), XIOC detected URL: https://docs.lammps.org/fix_setforce.html)),
extracted_from_files
detected URL: https://docs.lammps.org/ XIOC detected URL: https://docs.lammps.org/
extracted_from_files
detected URL: https://docs.lammps.org/Python_module.html). XIOC detected URL: https://docs.lammps.org/Python_module.html).
extracted_from_files
detected URL: https://docs.lammps.org/Python_head.html) XIOC detected URL: https://docs.lammps.org/Python_head.html)
extracted_from_files
detected URL: https://docs.lammps.org/compute_gyration.html) XIOC detected URL: https://docs.lammps.org/compute_gyration.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_python_invoke.html) XIOC detected URL: https://docs.lammps.org/fix_python_invoke.html)
extracted_from_files
detected URL: https://docs.lammps.org/shell.html), XIOC detected URL: https://docs.lammps.org/shell.html),
extracted_from_files
detected URL: https://docs.lammps.org/Python_module.html) XIOC detected URL: https://docs.lammps.org/Python_module.html)
extracted_from_files
detected URL: https://docs.lammps.org/region.html), XIOC detected URL: https://docs.lammps.org/region.html),
extracted_from_files
detected URL: http://extremelearning.com.au/evenly-distributing-points-in-a-triangle/ XIOC detected URL: http://extremelearning.com.au/evenly-distributing-points-in-a-triangle/
extracted_from_files
detected URL: https://docs.lammps.org/group.html). XIOC detected URL: https://docs.lammps.org/group.html).
extracted_from_files
detected URL: https://docs.lammps.org/neigh_modify.html). XIOC detected URL: https://docs.lammps.org/neigh_modify.html).
extracted_from_files
detected URL: https://en.wikipedia.org/wiki/STL_(file_format)) XIOC detected URL: https://en.wikipedia.org/wiki/STL_(file_format))
extracted_from_files
detected URL: https://docs.lammps.org/lattice.html) XIOC detected URL: https://docs.lammps.org/lattice.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_efield.html)) XIOC detected URL: https://docs.lammps.org/fix_efield.html))
extracted_from_files
detected URL: https://docs.lammps.org/neb_spin.html) XIOC detected URL: https://docs.lammps.org/neb_spin.html)
extracted_from_files
detected URL: https://docs.lammps.org/pair_zero.html) XIOC detected URL: https://docs.lammps.org/pair_zero.html)
extracted_from_files
detected URL: https://docs.lammps.org/next.html) XIOC detected URL: https://docs.lammps.org/next.html)
extracted_from_files
detected URL: https://docs.lammps.org/label.html), XIOC detected URL: https://docs.lammps.org/label.html),
extracted_from_files
detected URL: https://docs.lammps.org/fix_pour.html) XIOC detected URL: https://docs.lammps.org/fix_pour.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_nve_manifold_rattle.html) XIOC detected URL: https://docs.lammps.org/fix_nve_manifold_rattle.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_ehex.html), XIOC detected URL: https://docs.lammps.org/fix_ehex.html),
extracted_from_files
detected URL: https://docs.lammps.org/timestep.html). XIOC detected URL: https://docs.lammps.org/timestep.html).
extracted_from_files
detected URL: https://json-schema.org/) XIOC detected URL: https://json-schema.org/)
extracted_from_files
detected URL: https://www.json.org/), XIOC detected URL: https://www.json.org/),
extracted_from_files
detected URL: https://docs.lammps.org/improper_style.html). XIOC detected URL: https://docs.lammps.org/improper_style.html).
extracted_from_files
detected URL: https://docs.lammps.org/Howto_drude.html) XIOC detected URL: https://docs.lammps.org/Howto_drude.html)
extracted_from_files
detected URL: https://www.json.org/). XIOC detected URL: https://www.json.org/).
extracted_from_files
detected URL: https://docs.lammps.org/pair_mesodpd.html) XIOC detected URL: https://docs.lammps.org/pair_mesodpd.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_pour.html), XIOC detected URL: https://docs.lammps.org/fix_pour.html),
extracted_from_files
detected URL: https://download.lammps.org/json/molecule-schema.json XIOC detected URL: https://download.lammps.org/json/molecule-schema.json
extracted_from_files
detected URL: https://docs.lammps.org/Howto_library.html), XIOC detected URL: https://docs.lammps.org/Howto_library.html),
extracted_from_files
detected URL: https://docs.lammps.org/dump.html). XIOC detected URL: https://docs.lammps.org/dump.html).
extracted_from_files
detected URL: https://docs.lammps.org/neigh_modify.html) XIOC detected URL: https://docs.lammps.org/neigh_modify.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_halt.html). XIOC detected URL: https://docs.lammps.org/fix_halt.html).
extracted_from_files
detected URL: https://docs.lammps.org/angle_class2.html) XIOC detected URL: https://docs.lammps.org/angle_class2.html)
extracted_from_files
detected URL: https://docs.lammps.org/bond_fene.html) XIOC detected URL: https://docs.lammps.org/bond_fene.html)
extracted_from_files
detected URL: https://matsci.org/c/lammps-development/42) XIOC detected URL: https://matsci.org/c/lammps-development/42)
extracted_from_files
detected URL: https://docs.lammps.org/delete_atoms.html) XIOC detected URL: https://docs.lammps.org/delete_atoms.html)
extracted_from_files
detected URL: https://docs.lammps.org/group.html) XIOC detected URL: https://docs.lammps.org/group.html)
extracted_from_files
detected URL: https://docs.lammps.org/pair_reaxff.html), XIOC detected URL: https://docs.lammps.org/pair_reaxff.html),
extracted_from_files
detected URL: https://docs.lammps.org/pair_buck.html), XIOC detected URL: https://docs.lammps.org/pair_buck.html),
extracted_from_files
detected URL: https://libatoms.github.io](https://libatoms.github.io/GAP/data.html), XIOC detected URL: https://libatoms.github.io](https://libatoms.github.io/GAP/data.html),
extracted_from_files
detected URL: https://github.com/libAtoms/QUIP](https://github.com/libAtoms/QUIP). XIOC detected URL: https://github.com/libAtoms/QUIP](https://github.com/libAtoms/QUIP).
extracted_from_files
detected URL: https://docs.lammps.org/pair_mesodpd.html), XIOC detected URL: https://docs.lammps.org/pair_mesodpd.html),
extracted_from_files
detected URL: https://docs.lammps.org/Howto_manifold.html) XIOC detected URL: https://docs.lammps.org/Howto_manifold.html)
extracted_from_files
detected URL: https://docs.lammps.org/pair_soft.html) XIOC detected URL: https://docs.lammps.org/pair_soft.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_nve_noforce.html), XIOC detected URL: https://docs.lammps.org/fix_nve_noforce.html),
extracted_from_files
detected URL: https://docs.lammps.org/run.html)) XIOC detected URL: https://docs.lammps.org/run.html))
extracted_from_files
detected URL: https://docs.lammps.org/compute_temp_eff.html). XIOC detected URL: https://docs.lammps.org/compute_temp_eff.html).
extracted_from_files
detected URL: https://docs.lammps.org/pair_eff.html) XIOC detected URL: https://docs.lammps.org/pair_eff.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_nvt_manifold_rattle.html) XIOC detected URL: https://docs.lammps.org/fix_nvt_manifold_rattle.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_nve_manifold_rattle.html), XIOC detected URL: https://docs.lammps.org/fix_nve_manifold_rattle.html),
extracted_from_files
detected URL: https://docs.lammps.org/fix_nve_manifold_rattle.html). XIOC detected URL: https://docs.lammps.org/fix_nve_manifold_rattle.html).
extracted_from_files
detected URL: https://docs.lammps.org/Howto_manifold.html). XIOC detected URL: https://docs.lammps.org/Howto_manifold.html).
extracted_from_files
detected URL: https://docs.lammps.org/fix_drude.html), XIOC detected URL: https://docs.lammps.org/fix_drude.html),
extracted_from_files
detected URL: https://docs.lammps.org/compute_temp_drude.html) XIOC detected URL: https://docs.lammps.org/compute_temp_drude.html)
extracted_from_files
detected URL: https://docs.lammps.org/Howto_drude.html). XIOC detected URL: https://docs.lammps.org/Howto_drude.html).
extracted_from_files
detected URL: https://docs.lammps.org/pair_eam.html). XIOC detected URL: https://docs.lammps.org/pair_eam.html).
extracted_from_files
detected URL: https://docs.lammps.org/pair_eam.html) XIOC detected URL: https://docs.lammps.org/pair_eam.html)
extracted_from_files
detected URL: https://openkim.org/browse/models/by-type](https://openkim.org/browse/models/by-type) XIOC detected URL: https://openkim.org/browse/models/by-type](https://openkim.org/browse/models/by-type)
extracted_from_files
detected URL: https://www.ctcms.nist.gov/potentials. XIOC detected URL: https://www.ctcms.nist.gov/potentials.
extracted_from_files
detected URL: https://docs.lammps.org/dump_modify.html) XIOC detected URL: https://docs.lammps.org/dump_modify.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_hyper_global.html) XIOC detected URL: https://docs.lammps.org/fix_hyper_global.html)
extracted_from_files
detected URL: https://docs.lammps.org/hyper.html), XIOC detected URL: https://docs.lammps.org/hyper.html),
extracted_from_files
detected URL: https://docs.lammps.org/timestep.html) XIOC detected URL: https://docs.lammps.org/timestep.html)
extracted_from_files
detected URL: https://docs.lammps.org/pair_lj.html). XIOC detected URL: https://docs.lammps.org/pair_lj.html).
extracted_from_files
detected URL: https://docs.lammps.org/fix_wall_reflect.html) XIOC detected URL: https://docs.lammps.org/fix_wall_reflect.html)
extracted_from_files
detected URL: https://docs.lammps.org/processors.html). XIOC detected URL: https://docs.lammps.org/processors.html).
extracted_from_files
detected URL: https://docs.lammps.org/boundary.html) XIOC detected URL: https://docs.lammps.org/boundary.html)
extracted_from_files
detected URL: https://docs.lammps.org/displace_atoms.html) XIOC detected URL: https://docs.lammps.org/displace_atoms.html)
extracted_from_files
detected URL: https://docs.lammps.org/pair_buck.html). XIOC detected URL: https://docs.lammps.org/pair_buck.html).
extracted_from_files
detected URL: https://docs.lammps.org/dihedral_coeff.html)) XIOC detected URL: https://docs.lammps.org/dihedral_coeff.html))
extracted_from_files
detected URL: https://docs.lammps.org/angle_coeff.html)) XIOC detected URL: https://docs.lammps.org/angle_coeff.html))
extracted_from_files
detected URL: https://docs.lammps.org/improper_coeff.html)) XIOC detected URL: https://docs.lammps.org/improper_coeff.html))
extracted_from_files
detected URL: https://docs.lammps.org/special_bonds.html) XIOC detected URL: https://docs.lammps.org/special_bonds.html)
extracted_from_files
detected URL: https://docs.lammps.org/labelmap.html) XIOC detected URL: https://docs.lammps.org/labelmap.html)
extracted_from_files
detected URL: https://docs.lammps.org/read_restart.html), XIOC detected URL: https://docs.lammps.org/read_restart.html),
extracted_from_files
detected URL: https://docs.lammps.org/read_dump.html), XIOC detected URL: https://docs.lammps.org/read_dump.html),
extracted_from_files
detected URL: https://docs.lammps.org/dihedral_style.html) XIOC detected URL: https://docs.lammps.org/dihedral_style.html)
extracted_from_files
detected URL: https://docs.lammps.org/pair_coul.html), XIOC detected URL: https://docs.lammps.org/pair_coul.html),
extracted_from_files
detected URL: https://docs.lammps.org/pair_thole.html), XIOC detected URL: https://docs.lammps.org/pair_thole.html),
extracted_from_files
detected URL: https://docs.lammps.org/pair_amoeba.html), XIOC detected URL: https://docs.lammps.org/pair_amoeba.html),
extracted_from_files
detected URL: https://docs.lammps.org/region.html) XIOC detected URL: https://docs.lammps.org/region.html)
extracted_from_files
detected URL: https://docs.lammps.org/boundary.html). XIOC detected URL: https://docs.lammps.org/boundary.html).
extracted_from_files
detected URL: https://docs.lammps.org/thermo_modify.html) XIOC detected URL: https://docs.lammps.org/thermo_modify.html)
extracted_from_files
detected URL: https://docs.lammps.org/compute_smd_tlsph_strain.html) XIOC detected URL: https://docs.lammps.org/compute_smd_tlsph_strain.html)
extracted_from_files
detected URL: https://docs.lammps.org/compute_smd_plastic_strain.html), XIOC detected URL: https://docs.lammps.org/compute_smd_plastic_strain.html),
extracted_from_files
detected URL: https://docs.lammps.org/fix_bond_create.html) XIOC detected URL: https://docs.lammps.org/fix_bond_create.html)
extracted_from_files
detected URL: https://docs.lammps.org/pair_style.html). XIOC detected URL: https://docs.lammps.org/pair_style.html).
extracted_from_files
detected URL: https://docs.lammps.org/bond_fene.html). XIOC detected URL: https://docs.lammps.org/bond_fene.html).
extracted_from_files
detected URL: https://docs.lammps.org/fix_adapt.html). XIOC detected URL: https://docs.lammps.org/fix_adapt.html).
extracted_from_files
detected URL: https://docs.lammps.org/neighbor.html), XIOC detected URL: https://docs.lammps.org/neighbor.html),
extracted_from_files
detected URL: https://docs.lammps.org/fix_gle.html) XIOC detected URL: https://docs.lammps.org/fix_gle.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_gld.html), XIOC detected URL: https://docs.lammps.org/fix_gld.html),
extracted_from_files
detected URL: https://docs.lammps.org/improper_harmonic.html) XIOC detected URL: https://docs.lammps.org/improper_harmonic.html)
extracted_from_files
detected URL: https://docs.lammps.org/improper_coeff.html), XIOC detected URL: https://docs.lammps.org/improper_coeff.html),
extracted_from_files
detected URL: https://docs.lammps.org/fix_thermal_conductivity.html) XIOC detected URL: https://docs.lammps.org/fix_thermal_conductivity.html)
extracted_from_files
detected URL: https://docs.lammps.org/angle_cosine_shift_exp.html) XIOC detected URL: https://docs.lammps.org/angle_cosine_shift_exp.html)
extracted_from_files
detected URL: https://docs.lammps.org/compute_stress_curvilinear.html) XIOC detected URL: https://docs.lammps.org/compute_stress_curvilinear.html)
extracted_from_files
detected URL: https://docs.lammps.org/compute_stress_mop.html) XIOC detected URL: https://docs.lammps.org/compute_stress_mop.html)
extracted_from_files
detected URL: https://docs.lammps.org/compute_stress_mop.html). XIOC detected URL: https://docs.lammps.org/compute_stress_mop.html).
extracted_from_files
detected URL: https://docs.lammps.org/fix_nh_uef.html) XIOC detected URL: https://docs.lammps.org/fix_nh_uef.html)
extracted_from_files
detected URL: https://docs.lammps.org/dump.html), XIOC detected URL: https://docs.lammps.org/dump.html),
extracted_from_files
detected URL: https://docs.lammps.org/pair_coul_slater.html), XIOC detected URL: https://docs.lammps.org/pair_coul_slater.html),
extracted_from_files
detected URL: https://docs.lammps.org/pair_coul.html) XIOC detected URL: https://docs.lammps.org/pair_coul.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_srd.html) XIOC detected URL: https://docs.lammps.org/fix_srd.html)
extracted_from_files
detected URL: https://docs.lammps.org/pair_morse.html) XIOC detected URL: https://docs.lammps.org/pair_morse.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_nve_dot.html), XIOC detected URL: https://docs.lammps.org/fix_nve_dot.html),
extracted_from_files
detected URL: https://docs.lammps.org/pair_style.html),[bond_style XIOC detected URL: https://docs.lammps.org/pair_style.html),[bond_style
extracted_from_files
detected URL: https://docs.lammps.org/Davidchack5 XIOC detected URL: https://docs.lammps.org/Davidchack5
extracted_from_files
detected URL: https://docs.lammps.org/angle_cosine_buck6d.html) XIOC detected URL: https://docs.lammps.org/angle_cosine_buck6d.html)
extracted_from_files
detected URL: https://docs.lammps.org/angle_amoeba.html) XIOC detected URL: https://docs.lammps.org/angle_amoeba.html)
extracted_from_files
detected URL: https://docs.lammps.org/angle_none.html) XIOC detected URL: https://docs.lammps.org/angle_none.html)
extracted_from_files
detected URL: https://docs.lammps.org/if.html) XIOC detected URL: https://docs.lammps.org/if.html)
extracted_from_files
detected URL: https://docs.lammps.org/pair_write.html), XIOC detected URL: https://docs.lammps.org/pair_write.html),
extracted_from_files
detected URL: https://docs.lammps.org/angle_mesocnt.html) XIOC detected URL: https://docs.lammps.org/angle_mesocnt.html)
extracted_from_files
detected URL: https://docs.lammps.org/angle_lepton.html) XIOC detected URL: https://docs.lammps.org/angle_lepton.html)
extracted_from_files
detected URL: https://docs.lammps.org/angle_cross.html) XIOC detected URL: https://docs.lammps.org/angle_cross.html)
extracted_from_files
detected URL: https://docs.lammps.org/angle_cosine_shift.html) XIOC detected URL: https://docs.lammps.org/angle_cosine_shift.html)
extracted_from_files
detected URL: https://docs.lammps.org/compute_temp_chunk.html) XIOC detected URL: https://docs.lammps.org/compute_temp_chunk.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_langevin.html). XIOC detected URL: https://docs.lammps.org/fix_langevin.html).
extracted_from_files
detected URL: https://docs.lammps.org/fix_nh.html)). XIOC detected URL: https://docs.lammps.org/fix_nh.html)).
extracted_from_files
detected URL: https://docs.lammps.org/pair_lubricate.html), XIOC detected URL: https://docs.lammps.org/pair_lubricate.html),
extracted_from_files
detected URL: https://docs.lammps.org/pair_table.html) XIOC detected URL: https://docs.lammps.org/pair_table.html)
extracted_from_files
detected URL: https://docs.lammps.org/pair_charmm.html)), XIOC detected URL: https://docs.lammps.org/pair_charmm.html)),
extracted_from_files
detected URL: https://docs.lammps.org/pair_lj_cut_coul.html)) XIOC detected URL: https://docs.lammps.org/pair_lj_cut_coul.html))
extracted_from_files
detected URL: https://docs.lammps.org/fix_nve_limit.html). XIOC detected URL: https://docs.lammps.org/fix_nve_limit.html).
extracted_from_files
detected URL: https://docs.lammps.org/fix_store_state.html) XIOC detected URL: https://docs.lammps.org/fix_store_state.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_indent.html). XIOC detected URL: https://docs.lammps.org/fix_indent.html).
extracted_from_files
detected URL: https://docs.lammps.org/fix_enforce2d.html) XIOC detected URL: https://docs.lammps.org/fix_enforce2d.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_efield.html) XIOC detected URL: https://docs.lammps.org/fix_efield.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_addtorque.html) XIOC detected URL: https://docs.lammps.org/fix_addtorque.html)
extracted_from_files
detected URL: https://docs.lammps.org/pair_soft.html)) XIOC detected URL: https://docs.lammps.org/pair_soft.html))
extracted_from_files
detected URL: https://docs.lammps.org/pair_gromacs.html)). XIOC detected URL: https://docs.lammps.org/pair_gromacs.html)).
extracted_from_files
detected URL: https://docs.lammps.org/fix_viscous.html) XIOC detected URL: https://docs.lammps.org/fix_viscous.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_spring_self.html) XIOC detected URL: https://docs.lammps.org/fix_spring_self.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_spring.html) XIOC detected URL: https://docs.lammps.org/fix_spring.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_planeforce.html) XIOC detected URL: https://docs.lammps.org/fix_planeforce.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_lineforce.html) XIOC detected URL: https://docs.lammps.org/fix_lineforce.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_indent.html) XIOC detected URL: https://docs.lammps.org/fix_indent.html)
extracted_from_files
detected URL: https://docs.lammps.org/pair_cs.html), XIOC detected URL: https://docs.lammps.org/pair_cs.html),
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detected URL: https://docs.lammps.org/neigh_modify.html)), XIOC detected URL: https://docs.lammps.org/neigh_modify.html)),
extracted_from_files
detected URL: https://docs.lammps.org/fix_wall_region.html) XIOC detected URL: https://docs.lammps.org/fix_wall_region.html)
extracted_from_files
detected URL: https://docs.lammps.org/pair_modify.html) XIOC detected URL: https://docs.lammps.org/pair_modify.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_rx.html), XIOC detected URL: https://docs.lammps.org/fix_rx.html),
extracted_from_files
detected URL: https://docs.lammps.org/pair_lj_cut_coul.html) XIOC detected URL: https://docs.lammps.org/pair_lj_cut_coul.html)
extracted_from_files
detected URL: https://docs.lammps.org/bond_style.html) XIOC detected URL: https://docs.lammps.org/bond_style.html)
extracted_from_files
detected URL: https://docs.lammps.org/neighbor.html) XIOC detected URL: https://docs.lammps.org/neighbor.html)
extracted_from_files
detected URL: https://docs.lammps.org/improper_style.html), XIOC detected URL: https://docs.lammps.org/improper_style.html),
extracted_from_files
detected URL: https://docs.lammps.org/bond_coeff.html), XIOC detected URL: https://docs.lammps.org/bond_coeff.html),
extracted_from_files
detected URL: https://docs.lammps.org/fix_ave_correlate.html) XIOC detected URL: https://docs.lammps.org/fix_ave_correlate.html)
extracted_from_files
detected URL: https://docs.lammps.org/compute_smd_ulsph_num_neighs.html) XIOC detected URL: https://docs.lammps.org/compute_smd_ulsph_num_neighs.html)
extracted_from_files
detected URL: https://github.com/markdown-it/markdown-it-sup) XIOC detected URL: https://github.com/markdown-it/markdown-it-sup)
extracted_from_files
detected URL: https://registry.npmjs.org/acorn/-/acorn-4.0.13.tgz XIOC detected URL: https://registry.npmjs.org/acorn/-/acorn-4.0.13.tgz
extracted_from_files
detected URL: https://registry.npmjs.org/acorn-globals/-/acorn-globals-3.1.0.tgz XIOC detected URL: https://registry.npmjs.org/acorn-globals/-/acorn-globals-3.1.0.tgz
extracted_from_files
detected URL: https://registry.npmjs.org/ajv/-/ajv-4.11.8.tgz XIOC detected URL: https://registry.npmjs.org/ajv/-/ajv-4.11.8.tgz
extracted_from_files
detected URL: https://registry.npmjs.org/amdefine/-/amdefine-1.0.1.tgz XIOC detected URL: https://registry.npmjs.org/amdefine/-/amdefine-1.0.1.tgz
extracted_from_files
detected URL: https://github.com/mathjax/mathjax-node-cli/) XIOC detected URL: https://github.com/mathjax/mathjax-node-cli/)
extracted_from_files
detected URL: https://github.com/pkra/mathjax-node-page/) XIOC detected URL: https://github.com/pkra/mathjax-node-page/)
extracted_from_files
detected URL: https://github.com/pkra/mathjax-node-sre) XIOC detected URL: https://github.com/pkra/mathjax-node-sre)
extracted_from_files
detected URL: https://github.com/pkra/mathjax-node-svg2png) XIOC detected URL: https://github.com/pkra/mathjax-node-svg2png)
extracted_from_files
detected URL: https://www.npmjs.com/browse/depended/mathjax-node). XIOC detected URL: https://www.npmjs.com/browse/depended/mathjax-node).
extracted_from_files
detected URL: https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.0/fonts/HTML-CSS', XIOC detected URL: https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.0/fonts/HTML-CSS',
extracted_from_files
detected URL: https://docs.mathjax.org XIOC detected URL: https://docs.mathjax.org
extracted_from_files
detected URL: https://tools.ietf.org/html/rfc3492#section-3.4 XIOC detected URL: https://tools.ietf.org/html/rfc3492#section-3.4
extracted_from_files
detected URL: http:// XIOC detected URL: http://
extracted_from_files
detected URL: http://www.apache.org/licenses/ XIOC detected URL: http://www.apache.org/licenses/
extracted_from_files
detected URL: http://www.apache.org/licenses/LICENSE-2.0 XIOC detected URL: http://www.apache.org/licenses/LICENSE-2.0
extracted_from_files
detected URL: https://travis-ci.org/mathjax/MathJax-node.svg?branch=develop)](https://travis-ci.org/mathjax/MathJax-node) XIOC detected URL: https://travis-ci.org/mathjax/MathJax-node.svg?branch=develop)](https://travis-ci.org/mathjax/MathJax-node)
extracted_from_files
detected URL: https://github.com/mathjax/mathjax) XIOC detected URL: https://github.com/mathjax/mathjax)
extracted_from_files
detected URL: http://foo.com XIOC detected URL: http://foo.com
extracted_from_files
detected URL: https://github.com/mathiasbynens/he/blob/36afe179392226cf1b6ccdb16ebbb7a5a844d93a/src/he.js#L106-L134 XIOC detected URL: https://github.com/mathiasbynens/he/blob/36afe179392226cf1b6ccdb16ebbb7a5a844d93a/src/he.js#L106-L134
extracted_from_files
detected URL: https://html.spec.whatwg.org/multipage/parsing.html#named-character-reference-state XIOC detected URL: https://html.spec.whatwg.org/multipage/parsing.html#named-character-reference-state
extracted_from_files
detected URL: http://serverfault.com/questions/638260/ XIOC detected URL: http://serverfault.com/questions/638260/
extracted_from_files
detected URL: ftp://... XIOC detected URL: ftp://...
extracted_from_files
detected URL: https://github.com/markdown-it/linkify-it/issues/1 XIOC detected URL: https://github.com/markdown-it/linkify-it/issues/1
extracted_from_files
detected URL: https://docs.lammps.org/fix_nve_sphere.html) XIOC detected URL: https://docs.lammps.org/fix_nve_sphere.html)
extracted_from_files
detected URL: https://img.shields.io/npm/v/markdown-it.svg?style=flat)](https://www.npmjs.org/package/markdown-it) XIOC detected URL: https://img.shields.io/npm/v/markdown-it.svg?style=flat)](https://www.npmjs.org/package/markdown-it)
extracted_from_files
detected URL: https://coveralls.io/repos/markdown-it/markdown-it/badge.svg?branch=master&service=github)](https://coveralls.io/github/markdown-it/markdown-it?branch=master) XIOC detected URL: https://coveralls.io/repos/markdown-it/markdown-it/badge.svg?branch=master&service=github)](https://coveralls.io/github/markdown-it/markdown-it?branch=master)
extracted_from_files
detected URL: https://badges.gitter.im/Join%20Chat.svg)](https://gitter.im/markdown-it/markdown-it) XIOC detected URL: https://badges.gitter.im/Join%20Chat.svg)](https://gitter.im/markdown-it/markdown-it)
extracted_from_files
detected URL: https://markdown-it.github.io)__ XIOC detected URL: https://markdown-it.github.io)__
extracted_from_files
detected URL: http://spec.commonmark.org/)__ XIOC detected URL: http://spec.commonmark.org/)__
extracted_from_files
detected URL: https://github.com/markdown-it/markdown-it/tree/master/docs/security.md) XIOC detected URL: https://github.com/markdown-it/markdown-it/tree/master/docs/security.md)
extracted_from_files
detected URL: https://docs.lammps.org/Run_options.html). XIOC detected URL: https://docs.lammps.org/Run_options.html).
extracted_from_files
detected URL: https://docs.lammps.org/fix_dt_reset.html)) XIOC detected URL: https://docs.lammps.org/fix_dt_reset.html))
extracted_from_files
detected URL: https://docs.lammps.org/fix_ttm.html)). XIOC detected URL: https://docs.lammps.org/fix_ttm.html)).
extracted_from_files
detected URL: https://en.wikipedia.org/wiki/Stopping_power_%28particle_radiation%29 XIOC detected URL: https://en.wikipedia.org/wiki/Stopping_power_%28particle_radiation%29
extracted_from_files
detected URL: https://www.npmjs.org/browse/keyword/markdown-it-plugin)__ XIOC detected URL: https://www.npmjs.org/browse/keyword/markdown-it-plugin)__
extracted_from_files
detected URL: http://www.srim.org/ XIOC detected URL: http://www.srim.org/
extracted_from_files
detected URL: https://docs.lammps.org/compute_slcsa_atom.html) XIOC detected URL: https://docs.lammps.org/compute_slcsa_atom.html)
extracted_from_files
detected URL: https://github.com/casus/mala) XIOC detected URL: https://github.com/casus/mala)
extracted_from_files
detected URL: https://docs.lammps.org/fix_ave_correlate.html). XIOC detected URL: https://docs.lammps.org/fix_ave_correlate.html).
extracted_from_files
detected URL: https://docs.lammps.org/fix_nve_asphere.html) XIOC detected URL: https://docs.lammps.org/fix_nve_asphere.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_hyper_local.html) XIOC detected URL: https://docs.lammps.org/fix_hyper_local.html)
extracted_from_files
detected URL: http://www.casp-program.org/ XIOC detected URL: http://www.casp-program.org/
extracted_from_files
detected URL: https://docs.lammps.org/compute_temp_profile.html) XIOC detected URL: https://docs.lammps.org/compute_temp_profile.html)
extracted_from_files
detected URL: https://github.com/markdown-it/markdown-it/actions/workflows/ci.yml/badge.svg)](https://github.com/markdown-it/markdown-it/actions/workflows/ci.yml) XIOC detected URL: https://github.com/markdown-it/markdown-it/actions/workflows/ci.yml/badge.svg)](https://github.com/markdown-it/markdown-it/actions/workflows/ci.yml)
extracted_from_files
detected URL: https://docs.lammps.org/dihedral_none.html) XIOC detected URL: https://docs.lammps.org/dihedral_none.html)
extracted_from_files
detected URL: https://docs.lammps.org/set.html), XIOC detected URL: https://docs.lammps.org/set.html),
extracted_from_files
detected URL: https://www.sdu.dk/en/DPASS XIOC detected URL: https://www.sdu.dk/en/DPASS
extracted_from_files
detected URL: https://docs.lammps.org/fix_nvt_sphere.html) XIOC detected URL: https://docs.lammps.org/fix_nvt_sphere.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_npt_sphere.html) XIOC detected URL: https://docs.lammps.org/fix_npt_sphere.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_add_heat.html) XIOC detected URL: https://docs.lammps.org/fix_add_heat.html)
extracted_from_files
detected URL: https://www.ideals.illinois.edu/handle/2142/16032](https://www.ideals.illinois.edu/handle/2142/16032)) XIOC detected URL: https://www.ideals.illinois.edu/handle/2142/16032](https://www.ideals.illinois.edu/handle/2142/16032))
extracted_from_files
detected URL: https://example.org/ XIOC detected URL: https://example.org/
extracted_from_files
detected URL: https://spec.commonmark.org/0.30/#html-blocks XIOC detected URL: https://spec.commonmark.org/0.30/#html-blocks
extracted_from_files
detected URL: https://github.com/markdown-it/markdown-it/issues/1000, XIOC detected URL: https://github.com/markdown-it/markdown-it/issues/1000,
extracted_from_files
detected URL: https://github.github.com/gfm/#tables-extension- XIOC detected URL: https://github.github.com/gfm/#tables-extension-
extracted_from_files
detected URL: https://github.com/markdown-it/markdown-it/blob/master/lib/renderer.mjs). XIOC detected URL: https://github.com/markdown-it/markdown-it/blob/master/lib/renderer.mjs).
extracted_from_files
detected URL: https://highlightjs.org/ XIOC detected URL: https://highlightjs.org/
extracted_from_files
detected URL: https://github.com/markdown-it/markdown-it/blob/master/lib/rules_core/replacements.mjs) XIOC detected URL: https://github.com/markdown-it/markdown-it/blob/master/lib/rules_core/replacements.mjs)
extracted_from_files
detected URL: https://github.com/markdown-it/markdown-it/blob/master/lib/presets/zero.mjs) XIOC detected URL: https://github.com/markdown-it/markdown-it/blob/master/lib/presets/zero.mjs)
extracted_from_files
detected URL: https://github.com/markdown-it/markdown-it/blob/master/lib/presets/default.mjs) XIOC detected URL: https://github.com/markdown-it/markdown-it/blob/master/lib/presets/default.mjs)
extracted_from_files
detected URL: https://github.com/markdown-it/markdown-it/blob/master/lib/rules_core/linkify.mjs) XIOC detected URL: https://github.com/markdown-it/markdown-it/blob/master/lib/rules_core/linkify.mjs)
extracted_from_files
detected URL: https://github.com/markdown-it/markdown-it/blob/master/lib/common/utils.mjs). XIOC detected URL: https://github.com/markdown-it/markdown-it/blob/master/lib/common/utils.mjs).
extracted_from_files
detected URL: https://github.com/markdown-it/markdown-it/blob/master/lib/helpers). XIOC detected URL: https://github.com/markdown-it/markdown-it/blob/master/lib/helpers).
extracted_from_files
detected URL: https://github.com/markdown-it/markdown-it/blob/master/lib/presets/commonmark.mjs) XIOC detected URL: https://github.com/markdown-it/markdown-it/blob/master/lib/presets/commonmark.mjs)
extracted_from_files
detected URL: https://github.com/markdown-it/markdown-it/tree/master/lib/presets) XIOC detected URL: https://github.com/markdown-it/markdown-it/tree/master/lib/presets)
extracted_from_files
detected URL: https://github.com/markdown-it/markdown-it XIOC detected URL: https://github.com/markdown-it/markdown-it
extracted_from_files
detected URL: http://example.org:foo XIOC detected URL: http://example.org:foo
extracted_from_files
detected URL: https://github.com/commonmark/cmark/commit/34250e12ccebdc6372b8b49c44fab57c72443460 XIOC detected URL: https://github.com/commonmark/cmark/commit/34250e12ccebdc6372b8b49c44fab57c72443460
extracted_from_files
detected URL: http://commonmark.org/) XIOC detected URL: http://commonmark.org/)
extracted_from_files
detected URL: https://github.com/markdown-it/markdown-it-mark) XIOC detected URL: https://github.com/markdown-it/markdown-it-mark)
extracted_from_files
detected URL: https://github.com/commonmark/cmark/issues/178#issuecomment-270417442 XIOC detected URL: https://github.com/commonmark/cmark/issues/178#issuecomment-270417442
extracted_from_files
detected URL: https://github.com/markdown-it/markdown-it/issues/720 XIOC detected URL: https://github.com/markdown-it/markdown-it/issues/720
extracted_from_files
detected URL: https://github.com/jgm/CommonMark XIOC detected URL: https://github.com/jgm/CommonMark
extracted_from_files
detected URL: https://registry.npmjs.org/abab/-/abab-1.0.3.tgz XIOC detected URL: https://registry.npmjs.org/abab/-/abab-1.0.3.tgz
extracted_from_files
detected URL: https://github.com/digitalmoksha/motion-markdown-it) XIOC detected URL: https://github.com/digitalmoksha/motion-markdown-it)
extracted_from_files
detected URL: https://github.com/ExecutableBookProject/markdown-it-py)- XIOC detected URL: https://github.com/ExecutableBookProject/markdown-it-py)-
extracted_from_files
detected URL: http://spec.commonmark.org/0.15/#ascii-punctuation-character XIOC detected URL: http://spec.commonmark.org/0.15/#ascii-punctuation-character
extracted_from_files
detected URL: https://github.com/markdown-it/markdown-it/blob/master/lib/renderer.mjs) XIOC detected URL: https://github.com/markdown-it/markdown-it/blob/master/lib/renderer.mjs)
extracted_from_files
detected URL: https://spec.commonmark.org/0.29/#line-ending XIOC detected URL: https://spec.commonmark.org/0.29/#line-ending
extracted_from_files
detected URL: https://mathiasbynens.be/notes/javascript-encoding XIOC detected URL: https://mathiasbynens.be/notes/javascript-encoding
extracted_from_files
detected URL: https://www.npmjs.org/browse/keyword/markdown-it-plugin) XIOC detected URL: https://www.npmjs.org/browse/keyword/markdown-it-plugin)
extracted_from_files
detected URL: https://github.com/markdown-it/markdown-it/blob/master/benchmark/implementations/current-commonmark/index.mjs) XIOC detected URL: https://github.com/markdown-it/markdown-it/blob/master/benchmark/implementations/current-commonmark/index.mjs)
extracted_from_files
detected URL: https://tidelift.com/subscription/pkg/npm-markdown-it?utm_source=npm-markdown-it&utm_medium=referral&utm_campaign=enterprise&utm_term=repo) XIOC detected URL: https://tidelift.com/subscription/pkg/npm-markdown-it?utm_source=npm-markdown-it&utm_medium=referral&utm_campaign=enterprise&utm_term=repo)
extracted_from_files
detected URL: https://github.com/rlidwka) XIOC detected URL: https://github.com/rlidwka)
extracted_from_files
detected URL: https://github.com/puzrin) XIOC detected URL: https://github.com/puzrin)
extracted_from_files
detected URL: https://github.com/jgm) XIOC detected URL: https://github.com/jgm)
extracted_from_files
detected URL: http://talk.commonmark.org XIOC detected URL: http://talk.commonmark.org
extracted_from_files
detected URL: https://docs.lammps.org/compute_rheo_property_atom.html), XIOC detected URL: https://docs.lammps.org/compute_rheo_property_atom.html),
extracted_from_files
detected URL: https://docs.lammps.org/fix_langevin.html) XIOC detected URL: https://docs.lammps.org/fix_langevin.html)
extracted_from_files
detected URL: https://markdown-it.github.io/markdown-it/#MarkdownIt.new) XIOC detected URL: https://markdown-it.github.io/markdown-it/#MarkdownIt.new)
extracted_from_files
detected URL: https://github.com/markdown-it/markdown-it/tree/master/docs) XIOC detected URL: https://github.com/markdown-it/markdown-it/tree/master/docs)
extracted_from_files
detected URL: https://markdown-it.github.io/markdown-it/)__ XIOC detected URL: https://markdown-it.github.io/markdown-it/)__
extracted_from_files
detected URL: https://cdnjs.com/libraries/markdown-it XIOC detected URL: https://cdnjs.com/libraries/markdown-it
extracted_from_files
detected URL: http://www.jsdelivr.com/#!markdown-it XIOC detected URL: http://www.jsdelivr.com/#!markdown-it
extracted_from_files
detected URL: https://www.npmjs.org/browse/keyword/markdown-it) XIOC detected URL: https://www.npmjs.org/browse/keyword/markdown-it)
extracted_from_files
detected URL: https://github.com/markdown-it/linkify-it) XIOC detected URL: https://github.com/markdown-it/linkify-it)
extracted_from_files
detected URL: https://docs.lammps.org/Howto_thermostat.html) XIOC detected URL: https://docs.lammps.org/Howto_thermostat.html)
extracted_from_files
detected URL: https://docs.lammps.org/Howto_barostat.html) XIOC detected URL: https://docs.lammps.org/Howto_barostat.html)
extracted_from_files
detected URL: https://docs.lammps.org/create_box.html), XIOC detected URL: https://docs.lammps.org/create_box.html),
extracted_from_files
detected URL: https://docs.lammps.org/fix_nve.html) XIOC detected URL: https://docs.lammps.org/fix_nve.html)
extracted_from_files
detected URL: https://docs.lammps.org/compute_pe_atom.html) XIOC detected URL: https://docs.lammps.org/compute_pe_atom.html)
extracted_from_files
detected URL: https://docs.lammps.org/fix_modify.html). XIOC detected URL: https://docs.lammps.org/fix_modify.html).
extracted_from_files
detected URL: https://docs.lammps.org/minimize.html) XIOC detected URL: https://docs.lammps.org/minimize.html)
extracted_from_files
detected URL: https://dft.sandia.gov/Quest). XIOC detected URL: https://dft.sandia.gov/Quest).
extracted_from_files
detected URL: https://docs.lammps.org/fix_box_relax.html) XIOC detected URL: https://docs.lammps.org/fix_box_relax.html)
extracted_from_files
detected URL: https://docs.lammps.org/Modify.html). XIOC detected URL: https://docs.lammps.org/Modify.html).
extracted_from_files
detected URL: https://docs.lammps.org/Howto_library.html) XIOC detected URL: https://docs.lammps.org/Howto_library.html)
extracted_from_files
detected URL: https://docs.lammps.org/Python_head.html). XIOC detected URL: https://docs.lammps.org/Python_head.html).
extracted_from_files
detected URL: https://github.com/Colvars/colvars](https://github.com/colvars/colvars). XIOC detected URL: https://github.com/Colvars/colvars](https://github.com/colvars/colvars).
extracted_from_files
detected URL: https://docs.lammps.org/pair_mliap.html), XIOC detected URL: https://docs.lammps.org/pair_mliap.html),
extracted_from_files
Security Analysis Summary
Security Analysis Overview
LAMMPS Script Syntax is a OpenVSX Registry extension published by thangckt. Version 1.0.1 has been analyzed by the Risky Plugins security platform, receiving a risk score of 64.92/100 (MEDIUM risk) based on 3871 security findings.
Risk Assessment
This extension presents high security risk. Significant concerns were identified during analysis. It is not recommended for use in sensitive or production environments without thorough review.
Findings Breakdown
- Medium: 3855 finding(s)
- Low: 16 finding(s)
What Was Analyzed
The security assessment covers multiple analysis categories:
- Malware Detection: YARA rule matching against 2,400+ malware signatures
- Secret Detection: Scanning for exposed API keys, tokens, and credentials
- Static Analysis: Code-level security analysis for common vulnerability patterns
- Network Analysis: Detection of suspicious network communications and endpoints
- Obfuscation Detection: Identification of code obfuscation techniques
Developer Information
LAMMPS Script Syntax is published by thangckt on the OpenVSX Registry marketplace.
Recommendation
This extension is not recommended for installation without thorough manual review. Consider alternatives with lower risk scores, or contact the developer to address the identified security concerns.
Source Code Not Available
Source code is not available for this version of the extension.
Frequently Asked Questions
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